Mercurial > repos > earlhaminst > gff3_to_json
comparison test-data/Caenorhabditis_elegans.WBcel235.33.chromosome.I_shortened.gff3 @ 0:be6cec883b02 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
| author | earlhaminst |
|---|---|
| date | Wed, 21 Dec 2016 10:02:59 -0500 |
| parents | |
| children |
comparison
equal
deleted
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| -1:000000000000 | 0:be6cec883b02 |
|---|---|
| 1 ##gff-version 3 | |
| 2 #!genome-build WormBase WBcel235 | |
| 3 #!genome-version WBcel235 | |
| 4 #!genome-date 2012-12 | |
| 5 #!genome-build-accession NCBI:GCA_000002985.3 | |
| 6 #!genebuild-last-updated 2014-10 | |
| 7 I WormBase chromosome 1 15072434 . . . ID=chromosome:I;Alias=BX284601.5,NC_003279.8 | |
| 8 I WormBase gene 10413 16842 . + . ID=gene:WBGene00022276;Name=nlp-40;biotype=protein_coding;description=Neuropeptide-Like Protein [Source:RefSeq peptide%3BAcc:NP_001293206];gene_id=WBGene00022276;logic_name=wormbase | |
| 9 I WormBase gene 17483 26781 . - . ID=gene:WBGene00022278;Name=rcor-1;biotype=protein_coding;description=RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide%3BAcc:NP_001293207];gene_id=WBGene00022278;logic_name=wormbase | |
| 10 I WormBase miRNA_gene 6054951 6055002 . - . ID=gene:WBGene00219261;Name=mir-4926;biotype=miRNA;gene_id=WBGene00219261;logic_name=wormbase_non_coding | |
| 11 I WormBase mRNA 10413 16842 . + . ID=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.2;Parent=gene:WBGene00022276;biotype=protein_coding;transcript_id=Y74C9A.2a.2 | |
| 12 I WormBase mRNA 17483 24796 . - . ID=transcript:Y74C9A.4d;Name=Y74C9A.4d;Parent=gene:WBGene00022278;biotype=protein_coding;transcript_id=Y74C9A.4d | |
| 13 I WormBase transcript 6054951 6055002 . - . ID=transcript:C27A12.13;Name=C27A12.13;Parent=gene:WBGene00219261;biotype=pre_miRNA;transcript_id=C27A12.13 | |
| 14 I WormBase miRNA 6054982 6055002 . - . ID=transcript:C27A12.13a;Name=C27A12.13a;Parent=gene:WBGene00219261;biotype=miRNA;transcript_id=C27A12.13a | |
| 15 I WormBase exon 10413 10585 . + . Name=Y74C9A.2a.2.e1;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2a.2.e1;rank=1 | |
| 16 I WormBase exon 11618 11689 . + . Name=Y74C9A.2a.1.e1;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2a.1.e1;rank=2 | |
| 17 I WormBase exon 14951 15160 . + . Name=Y74C9A.2a.1.e2;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e2;rank=3 | |
| 18 I WormBase exon 16473 16842 . + . Name=Y74C9A.2a.1.e3;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4 | |
| 19 I WormBase exon 24651 24796 . - . Name=Y74C9A.4d.e1;Parent=transcript:Y74C9A.4d;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.4d.e1;rank=1 | |
| 20 I WormBase exon 21013 21136 . - . Name=Y74C9A.4d.e2;Parent=transcript:Y74C9A.4d;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.4d.e2;rank=2 | |
| 21 I WormBase exon 20848 20964 . - . Name=Y74C9A.4a.e8;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=3 | |
| 22 I WormBase exon 20271 20478 . - . Name=Y74C9A.4a.e9;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=4 | |
| 23 I WormBase exon 19015 19241 . - . Name=Y74C9A.4a.e10;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=5 | |
| 24 I WormBase exon 18006 18115 . - . Name=Y74C9A.4a.e11;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=6 | |
| 25 I WormBase exon 17483 17958 . - . Name=Y74C9A.4a.e12;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=7 | |
| 26 I WormBase exon 6054982 6055002 . - . Name=C27A12.13a.e1;Parent=transcript:C27A12.13a;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=C27A12.13a.e1;rank=1 | |
| 27 I WormBase CDS 11641 11689 . + 0 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 | |
| 28 I WormBase CDS 14951 15160 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 | |
| 29 I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 | |
| 30 I WormBase CDS 21013 21127 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 31 I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 32 I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 33 I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 34 I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 35 I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d | |
| 36 I WormBase five_prime_UTR 10413 10585 . + . Parent=transcript:Y74C9A.2a.2 | |
| 37 I WormBase five_prime_UTR 11618 11640 . + . Parent=transcript:Y74C9A.2a.2 | |
| 38 I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2a.2 | |
| 39 I WormBase five_prime_UTR 24651 24796 . - . Parent=transcript:Y74C9A.4d | |
| 40 I WormBase five_prime_UTR 21128 21136 . - . Parent=transcript:Y74C9A.4d | |
| 41 I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4d |