Mercurial > repos > earlhaminst > gff3_to_json

annotate test-data/Caenorhabditis_elegans.WBcel235.33.chromosome.I_shortened.gff3 @ 0:be6cec883b02 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
author earlhaminst
date Wed, 21 Dec 2016 10:02:59 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
1 ##gff-version 3
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
2 #!genome-build WormBase WBcel235
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
3 #!genome-version WBcel235
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
4 #!genome-date 2012-12
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
5 #!genome-build-accession NCBI:GCA_000002985.3
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
6 #!genebuild-last-updated 2014-10
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
7 I WormBase chromosome 1 15072434 . . . ID=chromosome:I;Alias=BX284601.5,NC_003279.8
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
8 I WormBase gene 10413 16842 . + . ID=gene:WBGene00022276;Name=nlp-40;biotype=protein_coding;description=Neuropeptide-Like Protein [Source:RefSeq peptide%3BAcc:NP_001293206];gene_id=WBGene00022276;logic_name=wormbase
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
9 I WormBase gene 17483 26781 . - . ID=gene:WBGene00022278;Name=rcor-1;biotype=protein_coding;description=RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide%3BAcc:NP_001293207];gene_id=WBGene00022278;logic_name=wormbase
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
10 I WormBase miRNA_gene 6054951 6055002 . - . ID=gene:WBGene00219261;Name=mir-4926;biotype=miRNA;gene_id=WBGene00219261;logic_name=wormbase_non_coding
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
11 I WormBase mRNA 10413 16842 . + . ID=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.2;Parent=gene:WBGene00022276;biotype=protein_coding;transcript_id=Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
12 I WormBase mRNA 17483 24796 . - . ID=transcript:Y74C9A.4d;Name=Y74C9A.4d;Parent=gene:WBGene00022278;biotype=protein_coding;transcript_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
13 I WormBase transcript 6054951 6055002 . - . ID=transcript:C27A12.13;Name=C27A12.13;Parent=gene:WBGene00219261;biotype=pre_miRNA;transcript_id=C27A12.13
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
14 I WormBase miRNA 6054982 6055002 . - . ID=transcript:C27A12.13a;Name=C27A12.13a;Parent=gene:WBGene00219261;biotype=miRNA;transcript_id=C27A12.13a
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
15 I WormBase exon 10413 10585 . + . Name=Y74C9A.2a.2.e1;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2a.2.e1;rank=1
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
16 I WormBase exon 11618 11689 . + . Name=Y74C9A.2a.1.e1;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2a.1.e1;rank=2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
17 I WormBase exon 14951 15160 . + . Name=Y74C9A.2a.1.e2;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e2;rank=3
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
18 I WormBase exon 16473 16842 . + . Name=Y74C9A.2a.1.e3;Parent=transcript:Y74C9A.2a.2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
19 I WormBase exon 24651 24796 . - . Name=Y74C9A.4d.e1;Parent=transcript:Y74C9A.4d;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.4d.e1;rank=1
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
20 I WormBase exon 21013 21136 . - . Name=Y74C9A.4d.e2;Parent=transcript:Y74C9A.4d;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.4d.e2;rank=2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
21 I WormBase exon 20848 20964 . - . Name=Y74C9A.4a.e8;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=3
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
22 I WormBase exon 20271 20478 . - . Name=Y74C9A.4a.e9;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=4
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
23 I WormBase exon 19015 19241 . - . Name=Y74C9A.4a.e10;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=5
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
24 I WormBase exon 18006 18115 . - . Name=Y74C9A.4a.e11;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=6
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
25 I WormBase exon 17483 17958 . - . Name=Y74C9A.4a.e12;Parent=transcript:Y74C9A.4d;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=7
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
26 I WormBase exon 6054982 6055002 . - . Name=C27A12.13a.e1;Parent=transcript:C27A12.13a;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=C27A12.13a.e1;rank=1
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
27 I WormBase CDS 11641 11689 . + 0 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
28 I WormBase CDS 14951 15160 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
29 I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
30 I WormBase CDS 21013 21127 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
31 I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
32 I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
33 I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
34 I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
35 I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
36 I WormBase five_prime_UTR 10413 10585 . + . Parent=transcript:Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
37 I WormBase five_prime_UTR 11618 11640 . + . Parent=transcript:Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
38 I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2a.2
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
39 I WormBase five_prime_UTR 24651 24796 . - . Parent=transcript:Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
40 I WormBase five_prime_UTR 21128 21136 . - . Parent=transcript:Y74C9A.4d
be6cec883b02 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 822c798d43a72724eeab174043fdaafcfdac845f-dirty
earlhaminst
parents:
diff changeset
41 I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4d