Mercurial > repos > earlhaminst > gff3_to_json

diff gff3_to_json.xml @ 1:befe6021e476 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 5e5fbe362ed5a4714debda0f2c0834cbbfd34147
author earlhaminst
date Tue, 28 Feb 2017 12:06:04 -0500
parents be6cec883b02
children
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line diff
--- a/gff3_to_json.xml	Wed Dec 21 10:02:59 2016 -0500
+++ b/gff3_to_json.xml	Tue Feb 28 12:06:04 2017 -0500
@@ -5,17 +5,17 @@
     </stdio>
     <command>
 <![CDATA[
-python $__tool_directory__/gff3_to_json.py
+python '$__tool_directory__/gff3_to_json.py'
 #for $q in $queries
-    --gff3 "${q.genome}:${q.gff3_input}"
+    --gff3 '${q.genome}:${q.gff3_input}'
 #end for
 #if str($json) != 'None'
     #for $v in $json
-        --json "$v"
+        --json '$v'
     #end for
 #end if
 $sort
-> "$output"
+-o '$output'
 ]]>
     </command>