Mercurial > repos > earlhaminst > gff3_to_json
view test-data/Caenorhabditis_elegans.WBcel235.33.chromosome.I_shortened.json @ 1:befe6021e476 draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 5e5fbe362ed5a4714debda0f2c0834cbbfd34147
author | earlhaminst |
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date | Tue, 28 Feb 2017 12:06:04 -0500 |
parents | be6cec883b02 |
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{"WBGene00022276": {"Name": "nlp-40", "Transcript": [{"Exon": [{"Name": "Y74C9A.2a.2.e1", "Parent": "Y74C9A.2a.2", "constitutive": "0", "end": 10585, "ensembl_end_phase": "-1", "ensembl_phase": "-1", "exon_id": "Y74C9A.2a.2.e1", "id": "Y74C9A.2a.2.e1", "length": 173, "object_type": "Exon", "rank": "1", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 10413, "strand": 1}, {"Name": "Y74C9A.2a.1.e1", "Parent": "Y74C9A.2a.2", "constitutive": "0", "end": 11689, "ensembl_end_phase": "1", "ensembl_phase": "-1", "exon_id": "Y74C9A.2a.1.e1", "id": "Y74C9A.2a.1.e1", "length": 72, "object_type": "Exon", "rank": "2", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 11618, "strand": 1}, {"Name": "Y74C9A.2a.1.e2", "Parent": "Y74C9A.2a.2", "constitutive": "0", "end": 15160, "ensembl_end_phase": "1", "ensembl_phase": "1", "exon_id": "Y74C9A.2a.1.e2", "id": "Y74C9A.2a.1.e2", "length": 210, "object_type": "Exon", "rank": "3", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 14951, "strand": 1}, {"Name": "Y74C9A.2a.1.e3", "Parent": "Y74C9A.2a.2", "constitutive": "0", "end": 16842, "ensembl_end_phase": "-1", "ensembl_phase": "1", "exon_id": "Y74C9A.2a.1.e3", "id": "Y74C9A.2a.1.e3", "length": 370, "object_type": "Exon", "rank": "4", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 16473, "strand": 1}], "Name": "Y74C9A.2a.2", "Parent": "WBGene00022276", "Translation": {"CDS": [{"Parent": "Y74C9A.2a.2", "end": 11689, "id": "Y74C9A.2a.2", "protein_id": "Y74C9A.2a.2", "start": 11641, "strand": 1}, {"Parent": "Y74C9A.2a.2", "end": 15160, "id": "Y74C9A.2a.2", "protein_id": "Y74C9A.2a.2", "start": 14951, "strand": 1}, {"Parent": "Y74C9A.2a.2", "end": 16585, "id": "Y74C9A.2a.2", "protein_id": "Y74C9A.2a.2", "start": 16473, "strand": 1}], "end": 16585, "id": "Y74C9A.2a.2", "object_type": "Translation", "species": "caenorhabditiselegans", "start": 11641}, "biotype": "protein_coding", "end": 16842, "id": "Y74C9A.2a.2", "object_type": "Transcript", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 10413, "strand": 1, "transcript_id": "Y74C9A.2a.2"}], "biotype": "protein_coding", "description": "Neuropeptide-Like Protein [Source:RefSeq peptide%3BAcc:NP_001293206]", "end": 16842, "gene_id": "WBGene00022276", "id": "WBGene00022276", "logic_name": "wormbase", "member_id": 0, "object_type": "Gene", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 10413, "strand": 1}, "WBGene00022278": {"Name": "rcor-1", "Transcript": [{"Exon": [{"Name": "Y74C9A.4a.e12", "Parent": "Y74C9A.4d", "constitutive": "1", "end": 17958, "ensembl_end_phase": "-1", "ensembl_phase": "0", "exon_id": "Y74C9A.4a.e12", "id": "Y74C9A.4a.e12", "length": 476, "object_type": "Exon", "rank": "7", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 17483, "strand": -1}, {"Name": "Y74C9A.4a.e11", "Parent": "Y74C9A.4d", "constitutive": "1", "end": 18115, "ensembl_end_phase": "0", "ensembl_phase": "1", "exon_id": "Y74C9A.4a.e11", "id": "Y74C9A.4a.e11", "length": 110, "object_type": "Exon", "rank": "6", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 18006, "strand": -1}, {"Name": "Y74C9A.4a.e10", "Parent": "Y74C9A.4d", "constitutive": "1", "end": 19241, "ensembl_end_phase": "1", "ensembl_phase": "2", "exon_id": "Y74C9A.4a.e10", "id": "Y74C9A.4a.e10", "length": 227, "object_type": "Exon", "rank": "5", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 19015, "strand": -1}, {"Name": "Y74C9A.4a.e9", "Parent": "Y74C9A.4d", "constitutive": "1", "end": 20478, "ensembl_end_phase": "2", "ensembl_phase": "1", "exon_id": "Y74C9A.4a.e9", "id": "Y74C9A.4a.e9", "length": 208, "object_type": "Exon", "rank": "4", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 20271, "strand": -1}, {"Name": "Y74C9A.4a.e8", "Parent": "Y74C9A.4d", "constitutive": "1", "end": 20964, "ensembl_end_phase": "1", "ensembl_phase": "1", "exon_id": "Y74C9A.4a.e8", "id": "Y74C9A.4a.e8", "length": 117, "object_type": "Exon", "rank": "3", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 20848, "strand": -1}, {"Name": "Y74C9A.4d.e2", "Parent": "Y74C9A.4d", "constitutive": "0", "end": 21136, "ensembl_end_phase": "1", "ensembl_phase": "-1", "exon_id": "Y74C9A.4d.e2", "id": "Y74C9A.4d.e2", "length": 124, "object_type": "Exon", "rank": "2", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 21013, "strand": -1}, {"Name": "Y74C9A.4d.e1", "Parent": "Y74C9A.4d", "constitutive": "0", "end": 24796, "ensembl_end_phase": "-1", "ensembl_phase": "-1", "exon_id": "Y74C9A.4d.e1", "id": "Y74C9A.4d.e1", "length": 146, "object_type": "Exon", "rank": "1", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 24651, "strand": -1}], "Name": "Y74C9A.4d", "Parent": "WBGene00022278", "Translation": {"CDS": [{"Parent": "Y74C9A.4d", "end": 17958, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 17911, "strand": -1}, {"Parent": "Y74C9A.4d", "end": 18115, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 18006, "strand": -1}, {"Parent": "Y74C9A.4d", "end": 19241, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 19015, "strand": -1}, {"Parent": "Y74C9A.4d", "end": 20478, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 20271, "strand": -1}, {"Parent": "Y74C9A.4d", "end": 20964, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 20848, "strand": -1}, {"Parent": "Y74C9A.4d", "end": 21127, "id": "Y74C9A.4d", "protein_id": "Y74C9A.4d", "start": 21013, "strand": -1}], "end": 21127, "id": "Y74C9A.4d", "object_type": "Translation", "species": "caenorhabditiselegans", "start": 17911}, "biotype": "protein_coding", "end": 24796, "id": "Y74C9A.4d", "object_type": "Transcript", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 17483, "strand": -1, "transcript_id": "Y74C9A.4d"}], "biotype": "protein_coding", "description": "RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide%3BAcc:NP_001293207]", "end": 26781, "gene_id": "WBGene00022278", "id": "WBGene00022278", "logic_name": "wormbase", "member_id": 1, "object_type": "Gene", "seq_region_name": "I", "species": "caenorhabditiselegans", "start": 17483, "strand": -1}}