Mercurial > repos > earlhaminst > gstf_preparation

changeset 2:19644996bc2a draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 3f85b0698a37f8fd5404df4044e891949357c011-dirty
author earlhaminst
date Fri, 17 Mar 2017 07:58:27 -0400
parents a36645976342
children 7e11a7f4bdba
files gstf_preparation.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gstf_preparation.xml	Thu Mar 16 12:41:51 2017 -0400
+++ b/gstf_preparation.xml	Fri Mar 17 07:58:27 2017 -0400
@@ -74,7 +74,11 @@
     scaffold_0  MYZPE13164_Clone_G006_v1.0  five_prime_utr  68851   69413   .   -   .   ID=MYZPE13164_G006_v1.0_000000030.1.5utr2;Parent=MYZPE13164_G006_v1.0_000000030.1
     scaffold_0  MYZPE13164_Clone_G006_v1.0  exon            68851   69413   .   -   .   ID=MYZPE13164_G006_v1.0_000000030.1.exon5;Parent=MYZPE13164_G006_v1.0_000000030.1
 
-The following features are parsed: **gene**, **mRNA**, **transcript**, **exon**, **five_prime_utr**, **three_prime_utr** and **CDS**, all other are ignored. Also, **ID** and **Parent** tags are needed to create relations.
+The following features are parsed: **gene**, **mRNA**, **transcript**, **exon**, **five_prime_utr**, **three_prime_utr** and **CDS**, all other are ignored. Also, **ID** and **Parent** attributes in the 9th column are needed to create relations among features.
+
+.. class:: warningmark
+
+If a value in the **ID** and **Parent** attribute contains a colon, everything up to the first colon will be discarded.
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     </help>
     <citations>