Mercurial > repos > earlhaminst > replace_chromosome_names

comparison test-data/GRCh37_ensembl2UCSC.txt @ 0:97c11d04cd4c draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/replace_chromosome_names/ commit 588282bf5cbb9909ad9cd8c316ec33158c858727
author earlhaminst
date Thu, 18 May 2017 14:17:48 -0400
parents
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comparison
equal deleted inserted replaced
-1:000000000000 0:97c11d04cd4c
1 1 chr1
2 2 chr2
3 3 chr3
4 4 chr4
5 5 chr5
6 6 chr6
7 7 chr7
8 8 chr8
9 9 chr9
10 10 chr10
11 11 chr11
12 12 chr12
13 13 chr13
14 14 chr14
15 15 chr15
16 16 chr16
17 17 chr17
18 18 chr18
19 19 chr19
20 20 chr20
21 21 chr21
22 22 chr22
23 X chrX
24 Y chrY
25 MT chrM
26 GL000191.1 chr1_gl000191_random
27 GL000192.1 chr1_gl000192_random
28 GL000193.1 chr4_gl000193_random
29 GL000194.1 chr4_gl000194_random
30 GL000195.1 chr7_gl000195_random
31 GL000196.1 chr8_gl000196_random
32 GL000197.1 chr8_gl000197_random
33 GL000198.1 chr9_gl000198_random
34 GL000199.1 chr9_gl000199_random
35 GL000200.1 chr9_gl000200_random
36 GL000201.1 chr9_gl000201_random
37 GL000202.1 chr11_gl000202_random
38 GL000203.1 chr17_gl000203_random
39 GL000204.1 chr17_gl000204_random
40 GL000205.1 chr17_gl000205_random
41 GL000206.1 chr17_gl000206_random
42 GL000207.1 chr18_gl000207_random
43 GL000208.1 chr19_gl000208_random
44 GL000209.1 chr19_gl000209_random
45 GL000210.1 chr21_gl000210_random
46 GL000211.1 chrUn_gl000211
47 GL000212.1 chrUn_gl000212
48 GL000213.1 chrUn_gl000213
49 GL000214.1 chrUn_gl000214
50 GL000215.1 chrUn_gl000215
51 GL000216.1 chrUn_gl000216
52 GL000217.1 chrUn_gl000217
53 GL000218.1 chrUn_gl000218
54 GL000219.1 chrUn_gl000219
55 GL000220.1 chrUn_gl000220
56 GL000221.1 chrUn_gl000221
57 GL000222.1 chrUn_gl000222
58 GL000223.1 chrUn_gl000223
59 GL000224.1 chrUn_gl000224
60 GL000225.1 chrUn_gl000225
61 GL000226.1 chrUn_gl000226
62 GL000227.1 chrUn_gl000227
63 GL000228.1 chrUn_gl000228
64 GL000229.1 chrUn_gl000229
65 GL000230.1 chrUn_gl000230
66 GL000231.1 chrUn_gl000231
67 GL000232.1 chrUn_gl000232
68 GL000233.1 chrUn_gl000233
69 GL000234.1 chrUn_gl000234
70 GL000235.1 chrUn_gl000235
71 GL000236.1 chrUn_gl000236
72 GL000237.1 chrUn_gl000237
73 GL000238.1 chrUn_gl000238
74 GL000239.1 chrUn_gl000239
75 GL000240.1 chrUn_gl000240
76 GL000241.1 chrUn_gl000241
77 GL000242.1 chrUn_gl000242
78 GL000243.1 chrUn_gl000243
79 GL000244.1 chrUn_gl000244
80 GL000245.1 chrUn_gl000245
81 GL000246.1 chrUn_gl000246
82 GL000247.1 chrUn_gl000247
83 GL000248.1 chrUn_gl000248
84 GL000249.1 chrUn_gl000249
85 HG1007_PATCH
86 HG1032_PATCH
87 HG104_HG975_PATCH
88 HG1063_PATCH
89 HG1074_PATCH
90 HG1079_PATCH
91 HG1082_HG167_PATCH
92 HG1091_PATCH
93 HG1133_PATCH
94 HG1146_PATCH
95 HG115_PATCH
96 HG1208_PATCH
97 HG1211_PATCH
98 HG122_PATCH
99 HG1257_PATCH
100 HG1287_PATCH
101 HG1292_PATCH
102 HG1293_PATCH
103 HG1304_PATCH
104 HG1308_PATCH
105 HG1322_PATCH
106 HG1350_HG959_PATCH
107 HG1423_PATCH
108 HG1424_PATCH
109 HG1425_PATCH
110 HG1426_PATCH
111 HG142_HG150_NOVEL_TEST
112 HG1433_PATCH
113 HG1434_PATCH
114 HG1435_PATCH
115 HG1436_HG1432_PATCH
116 HG1437_PATCH
117 HG1438_PATCH
118 HG1439_PATCH
119 HG1440_PATCH
120 HG1441_PATCH
121 HG1442_PATCH
122 HG1443_HG1444_PATCH
123 HG144_PATCH
124 HG1453_PATCH
125 HG1458_PATCH
126 HG1459_PATCH
127 HG1462_PATCH
128 HG1463_PATCH
129 HG1471_PATCH
130 HG1472_PATCH
131 HG1473_PATCH
132 HG1479_PATCH
133 HG1486_PATCH
134 HG1487_PATCH
135 HG1488_PATCH
136 HG1490_PATCH
137 HG1497_PATCH
138 HG14_PATCH
139 HG1500_PATCH
140 HG1501_PATCH
141 HG1502_PATCH
142 HG151_NOVEL_TEST
143 HG1591_PATCH
144 HG1592_PATCH
145 HG1595_PATCH
146 HG1699_PATCH
147 HG174_HG254_PATCH
148 HG183_PATCH
149 HG185_PATCH
150 HG186_PATCH
151 HG193_PATCH
152 HG19_PATCH
153 HG237_PATCH
154 HG243_PATCH
155 HG256_PATCH
156 HG271_PATCH
157 HG27_PATCH
158 HG280_PATCH
159 HG281_PATCH
160 HG299_PATCH
161 HG29_PATCH
162 HG305_PATCH
163 HG306_PATCH
164 HG311_PATCH
165 HG325_PATCH
166 HG329_PATCH
167 HG339_PATCH
168 HG344_PATCH
169 HG348_PATCH
170 HG357_PATCH
171 HG375_PATCH
172 HG385_PATCH
173 HG388_HG400_PATCH
174 HG414_PATCH
175 HG417_PATCH
176 HG418_PATCH
177 HG444_PATCH
178 HG480_HG481_PATCH
179 HG497_PATCH
180 HG506_HG507_HG1000_PATCH
181 HG50_PATCH
182 HG531_PATCH
183 HG536_PATCH
184 HG544_PATCH
185 HG686_PATCH
186 HG706_PATCH
187 HG729_PATCH
188 HG730_PATCH
189 HG736_PATCH
190 HG745_PATCH
191 HG747_PATCH
192 HG748_PATCH
193 HG75_PATCH
194 HG79_PATCH
195 HG7_PATCH
196 HG858_PATCH
197 HG865_PATCH
198 HG871_PATCH
199 HG873_PATCH
200 HG883_PATCH
201 HG905_PATCH
202 HG944_PATCH
203 HG946_PATCH
204 HG953_PATCH
205 HG957_PATCH
206 HG962_PATCH
207 HG971_PATCH
208 HG979_PATCH
209 HG987_PATCH
210 HG989_PATCH
211 HG990_PATCH
212 HG991_PATCH
213 HG995_PATCH
214 HG996_PATCH
215 HG998_1_PATCH
216 HG998_2_PATCH
217 HG999_1_PATCH
218 HG999_2_PATCH
219 HSCHR10_1_CTG2
220 HSCHR10_1_CTG5
221 HSCHR11_1_CTG1_1
222 HSCHR1_1_CTG31
223 HSCHR12_1_CTG1
224 HSCHR12_1_CTG2
225 HSCHR12_1_CTG2_1
226 HSCHR12_1_CTG5
227 HSCHR12_2_CTG2
228 HSCHR12_2_CTG2_1
229 HSCHR12_3_CTG2_1
230 HSCHR1_2_CTG31
231 HSCHR1_3_CTG31
232 HSCHR15_1_CTG4
233 HSCHR15_1_CTG8
234 HSCHR16_1_CTG3_1
235 HSCHR16_2_CTG3_1
236 HSCHR17_1_CTG1
237 HSCHR17_1_CTG4
238 HSCHR17_2_CTG4
239 HSCHR17_3_CTG4
240 HSCHR17_4_CTG4
241 HSCHR17_5_CTG4
242 HSCHR17_6_CTG4
243 HSCHR18_1_CTG1_1
244 HSCHR18_1_CTG2
245 HSCHR18_1_CTG2_1
246 HSCHR18_2_CTG1_1
247 HSCHR18_2_CTG2
248 HSCHR18_2_CTG2_1
249 HSCHR19_1_CTG3
250 HSCHR19_1_CTG3_1
251 HSCHR19_2_CTG3
252 HSCHR19_3_CTG3
253 HSCHR19LRC_COX1_CTG1
254 HSCHR19LRC_COX2_CTG1
255 HSCHR19LRC_LRC_I_CTG1
256 HSCHR19LRC_LRC_J_CTG1
257 HSCHR19LRC_LRC_S_CTG1
258 HSCHR19LRC_LRC_T_CTG1
259 HSCHR19LRC_PGF1_CTG1
260 HSCHR19LRC_PGF2_CTG1
261 HSCHR20_1_CTG1
262 HSCHR21_1_CTG1_1
263 HSCHR21_2_CTG1_1
264 HSCHR21_3_CTG1_1
265 HSCHR21_4_CTG1_1
266 HSCHR2_1_CTG1
267 HSCHR2_1_CTG12
268 HSCHR22_1_CTG1
269 HSCHR22_1_CTG2
270 HSCHR22_2_CTG1
271 HSCHR2_2_CTG12
272 HSCHR3_1_CTG1
273 HSCHR3_1_CTG2_1
274 HSCHR4_1_CTG12
275 HSCHR4_1_CTG6
276 HSCHR4_2_CTG9
277 HSCHR5_1_CTG1
278 HSCHR5_1_CTG2
279 HSCHR5_1_CTG5
280 HSCHR5_2_CTG1
281 HSCHR5_3_CTG1
282 HSCHR6_1_CTG5
283 HSCHR6_2_CTG5
284 HSCHR7_1_CTG6
285 HSCHR9_1_CTG1
286 HSCHR9_1_CTG35
287 HSCHR9_2_CTG35
288 HSCHR9_3_CTG35
289 HSCHR4_1 chr4_ctg9_hap1
290 HSCHR6_MHC_APD chr6_apd_hap1
291 HSCHR6_MHC_COX chr6_cox_hap2
292 HSCHR6_MHC_DBB chr6_dbb_hap3
293 HSCHR6_MHC_MANN chr6_mann_hap4
294 HSCHR6_MHC_MCF chr6_mcf_hap5
295 HSCHR6_MHC_QBL chr6_qbl_hap6
296 HSCHR6_MHC_SSTO chr6_ssto_hap7
297 HSCHR17_1 chr17_ctg5_hap1