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comparison t_coffee.xml @ 5:a91be6005274 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit e33ecdc7a0addaf800a66d5f7bf9f6c9b26699a3
author earlhaminst
date Tue, 28 Mar 2017 07:01:44 -0400
parents 78dd29aa7fc1
children c67bd5acbae2
comparison
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4:fa59d6fea7f5 5:a91be6005274
10 t_coffee -version | grep Version 10 t_coffee -version | grep Version
11 </version_command> 11 </version_command>
12 <command> 12 <command>
13 <![CDATA[ 13 <![CDATA[
14 #if str($input_type.filter_fasta) == 'yes' 14 #if str($input_type.filter_fasta) == 'yes'
15 #set $input = '-infile=stdin' 15 #set $input = 'temp.fasta'
16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' | 16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta &&
17 #end if 17 #end if
18 18
19 #set $method_opt = '' 19 #set $method_opt = ''
20 #if $method01 20 #if $method01
21 #set $method_opt += str($method01) + ',' 21 #set $method_opt += str($method01) + ','