Mercurial > repos > earlhaminst > t_coffee

diff t_coffee.xml @ 5:a91be6005274 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit e33ecdc7a0addaf800a66d5f7bf9f6c9b26699a3
author earlhaminst
date Tue, 28 Mar 2017 07:01:44 -0400
parents 78dd29aa7fc1
children c67bd5acbae2
line wrap: on
line diff
--- a/t_coffee.xml	Fri Mar 03 07:29:32 2017 -0500
+++ b/t_coffee.xml	Tue Mar 28 07:01:44 2017 -0400
@@ -12,8 +12,8 @@
     <command>
 <![CDATA[
         #if str($input_type.filter_fasta) == 'yes'
-            #set $input = '-infile=stdin'
-            python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' |
+            #set $input = 'temp.fasta'
+            python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta &&
         #end if
 
         #set $method_opt = ''