Mercurial > repos > earlhaminst > t_coffee
comparison t_coffee.xml @ 5:a91be6005274 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit e33ecdc7a0addaf800a66d5f7bf9f6c9b26699a3
author | earlhaminst |
---|---|
date | Tue, 28 Mar 2017 07:01:44 -0400 |
parents | 78dd29aa7fc1 |
children | c67bd5acbae2 |
comparison
equal
deleted
inserted
replaced
4:fa59d6fea7f5 | 5:a91be6005274 |
---|---|
10 t_coffee -version | grep Version | 10 t_coffee -version | grep Version |
11 </version_command> | 11 </version_command> |
12 <command> | 12 <command> |
13 <![CDATA[ | 13 <![CDATA[ |
14 #if str($input_type.filter_fasta) == 'yes' | 14 #if str($input_type.filter_fasta) == 'yes' |
15 #set $input = '-infile=stdin' | 15 #set $input = 'temp.fasta' |
16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' | | 16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta && |
17 #end if | 17 #end if |
18 | 18 |
19 #set $method_opt = '' | 19 #set $method_opt = '' |
20 #if $method01 | 20 #if $method01 |
21 #set $method_opt += str($method01) + ',' | 21 #set $method_opt += str($method01) + ',' |