Mercurial > repos > earlhaminst > t_coffee
comparison t_coffee.xml @ 1:b3833e5b50d4 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit 011cabb2a2b3237bbbc4850ed26972816702a2ba-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 19 Dec 2016 17:47:31 -0500 |
| parents | 794a6e864a96 |
| children | df6527887a18 |
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| 0:794a6e864a96 | 1:b3833e5b50d4 |
|---|---|
| 49 #end if | 49 #end if |
| 50 | 50 |
| 51 t_coffee '$input' $method_opt $output_opt -n_core \${GALAXY_SLOTS:-1} -run_name t_coffee_out -quiet | 51 t_coffee '$input' $method_opt $output_opt -n_core \${GALAXY_SLOTS:-1} -run_name t_coffee_out -quiet |
| 52 | 52 |
| 53 #if 'cigar' in $outputs_arr | 53 #if 'cigar' in $outputs_arr |
| 54 && perl '$__tool_directory__/t_coffee_to_cigar.pl' t_coffee_out.fasta_aln > '$cigar' | 54 && python '$__tool_directory__/t_coffee_to_cigar.py' t_coffee_out.fasta_aln > '$cigar' |
| 55 #end if | 55 #end if |
| 56 ]]> | 56 ]]> |
| 57 </command> | 57 </command> |
| 58 <inputs> | 58 <inputs> |
| 59 <conditional name="input_type"> | 59 <conditional name="input_type"> |