Mercurial > repos > earlhaminst > t_coffee

diff t_coffee.xml @ 1:b3833e5b50d4 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit 011cabb2a2b3237bbbc4850ed26972816702a2ba-dirty
author earlhaminst
date Mon, 19 Dec 2016 17:47:31 -0500
parents 794a6e864a96
children df6527887a18
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--- a/t_coffee.xml	Thu Dec 15 11:04:25 2016 -0500
+++ b/t_coffee.xml	Mon Dec 19 17:47:31 2016 -0500
@@ -51,7 +51,7 @@
         t_coffee '$input' $method_opt $output_opt -n_core \${GALAXY_SLOTS:-1} -run_name t_coffee_out -quiet
 
         #if 'cigar' in $outputs_arr
-            && perl '$__tool_directory__/t_coffee_to_cigar.pl' t_coffee_out.fasta_aln > '$cigar'
+            && python '$__tool_directory__/t_coffee_to_cigar.py' t_coffee_out.fasta_aln > '$cigar'
         #end if
 ]]>
     </command>