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diff t_coffee_to_cigar.xml @ 0:304d1a82708f draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee_to_cigar commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
author earlhaminst
date Fri, 11 Nov 2016 06:57:26 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/t_coffee_to_cigar.xml	Fri Nov 11 06:57:26 2016 -0500
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+<tool id="t_coffee_to_cigar" name="T-Coffee to CIGAR" version="0.2.0">
+    <description>
+        Converts T-Coffee FASTA alignments to CIGAR strings
+    </description>
+    <command>
+<![CDATA[
+perl $__tool_directory__/t_coffee_to_cigar.pl
+$input
+> $output
+]]>
+    </command>
+
+    <inputs>
+        <param name="input" type="data" format="fasta" label="FASTA alignments from T-Coffee" />
+    </inputs>
+
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${on_string}" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input" ftype="fasta" value="input.fasta" />
+            <output name="output" file="out.tabular" />
+        </test>
+    </tests>
+
+    <help>
+<![CDATA[
+Simple tool to convert FASTA alignments produced by T-Coffee to CIGAR format.
+]]>
+    </help>
+    <citations>
+    </citations>
+</tool>