view test-data/dna_alignment.fasta @ 3:dd268de3a107 draft

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/TreeBest commit 988b1fc1cb8739e45648465adbf099f3fdaf87f8
author earlhaminst
date Fri, 03 Mar 2017 07:22:53 -0500
parents 4f9e5110914b
children
line wrap: on
line source

>ENSLOCT00000017020_lepisosteusoculatus
ATGGACAAAGGGCAGAAACCCGAAATTGAGAAGAAAGATGTAATTGTCATTGGGGGTGGT
TTATCTGGCTTGTCTGCTGCTAAACTGCTGAAAGAGTCTGGATTGAATGTCCTGGTTCTG
GAAGCACGTGATCGTGTGGGTGGGAGAACGTTGACTGTAAAAGGGCCTGAATTCCAATAT
GTGGATCTTGGAGGTGCTTATGTTGGTCCAACTCAGAACAGCATTCTGAGACTTGCAAAA
GAACTGGGGGTGAAGACTCATTTAGTAAACGAGAAAGAGCGACTCATTCATTATTATAAG
GGTAAGACGTATCCATTTCGAGGGCCATTTCCTCCAGCATGGAACCCCATCGTCTACCTG
GATTACAACAACCTCTGGAGGACTCTGGACCGAATGGGAAAGGAGATCCCAGCAGATGCT
CCATGGACTGCTCAACATGCCACACAGTGGGACAATATGACGATGAAAGAACTAATTGAC
AAACATTGCTGGACAAGGACTGCAAAAAACTTTGCAACTCTCTTCGTCAATGTCAATGTG
ACCTCTGAACCTCATGAAGTCTCAGCGCTCTGGTTTCTTTGGTATGTGAAGCAGTGTGGA
GGGACAAAAAGGATATTTTCAACATCTAATGGAGGACAGGAAAGAAAATTCATGGGGGGA
TCAGGGCAGATTAGTGAACGGATCGCAGACCGGCTGAAGGGCAACGTCCACCTAAACCAG
CCTGTGATTAAGCTCTTGCAGACTCCAGCTGGTGTGTGTGTCGAAACACTAACTGGAAAT
AAGTATGAGGCAGCCTATGCCATCAGTGCTATTCCACCAGGGCTGAGCATGAGTTTGCAT
TATGAGCCCCAGCTGCCTCCAGTGAGAAACCAAATGATCCAAAGAGTCCCAATGGGGTCC
ATCATTAAATGCATGATGTACTACAAGAGGACCTTCTGGAGAGAGAAGGGGTACTGCGGA
ACAATGATGATCGAAGATGAGGACTCTCCCATTTCAATGACCCTAGATGACACCAAACCA
GATGGATCGTATCCCTGTATTATGGGGTTTGTTTTAGCAAGAAAAGCAAGAGATCTTATC
AATTTGACTAAGGATGAGAGG---AAAAAACGTATCTGTCAGATTTATGCAAAAGTGCTG
GGAACAAATGAAGCATTGCATCCTGTTCACTATGAAGAAAAAGACTGGTGTGAAGAACAA
TATTCAGGAGGCTGTTATACTGCCTATTTTCCTCCAGGTACCTTCTGCCAGTTCAGCAGA
GTTCTAAGGGAGCCTTTTGGTAGGCTCTTCTTCGCAGGCACAGAGACAGCAACCAGATGG
AGTGGATATATGGATGGTGCTGTTCAAGCTGGTGAGAGAGCTGGAAGAGAGGTACTGCAT
---GCAATGGGTAAAGTATCCCAGTCAAAAATCTGGAAGGAAGACGTAGAATCACAGGAA
GTTCCAGCTGAACCAATTACAACAAGTTTCTTAGAAGAGCATCTGCCTTCTGTCCCTGCA
TTTCTGACAATGATCGGAGTCTCTTTTGCATTTATCACAACAGCCGCAGCCCTTGGGTCG
GGCATCTTAAAGACAAATTCACGTTTACGTCTCTTTCAT
>ENSLACT00000014274_latimeriachalumnae
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------TTTTTTCTTTTTTTCTCCCAG
GGTAAGTCGTATCCCTTTAGGGGTCCTTTCCCTCCTATGTGGAACCCCATTGCCTATATG
GATTACAACAACCTGTGGAGAACAATGGACGAAATGGGGAAGGAGATCCCCAAGGAAGCC
CCGTGGAAGGCCCCACATGCTGAAGAATGGGATAAAATTACCATGAAGGATCTGATTGAC
AAAATCTGCTGGACAGGTGTTGCCAAGCAGTTTGCCACGCTGTTTGTGAATGTCAACGTT
ACTTCTGAACCCCATGAGGTCTCTGCTCTCTGGTTCCTGTGGTATGTGAAGCAGTGCGGT
GGAACGACCAGGATCTTTTCAACAACCAATGGTGGACAGGAGCGTAAGTTTGTTGGCGGT
TCAAGCCAGATCAGTGAGAAGATGATGGATCTCCTTGGAGATCAGGTGAAACTGCAGAGA
CCTGTAGTCGGCATTGATCAGTCTGGGGAGGATGTGGTCGTGGAGACTCTAAACCGTGAG
AAGTATGAGGCCAAATATGTCATTAGTGCCATTCCTCCAACCCTTAGTGTGAAGATTCAC
TACAACCCACCTTTGCCGCCTTTGAGAAACCAGTTAATCCATCGTGTTCCTTTGGGATCC
GTTATCAAGTGCATGGTGTATTACAAGGACTCATTTTGGAGAAAGCAGGATTACTGTGGC
AGCATGATAATTGAAGAAGAGGATGCTCCAATTGGGCTGACACTGGATGACACCAAACCA
GATGGCAGTGTGCCTGCCATTATGGGATTCATTCTTGCCCGAAAAGCCAGAAGACTAGCA
CATTTCACCAAAGAAGAGCGA---AAGAAGAAAATCTGTGAACTTTATGCAAGAGTTCTT
GGATCACAGGAAGCTTTACAGCCTGTACACTATGAAGAGAAGAACTGGTGTGAGGAGGAG
TACTCGGGCGGGTGTTACACTGCTTACTTCCCACCAGGAATAATGACCCAGTTTGGCAAG
GTAATCCGTCAGCCAGTTGGCAGAATTTTCTTTGCCGGCACTGAGACGGCTACCGAGTGG
AGCGGCTACATGGAGGGGGCAGTGCAGGCTGGAGAGAGAGCAGCCAGAGAGATCTTATGT
---TCAATGAGAAGAATTCCTGAAAGTGAAATCTGGAAGCCTGAGCCAGAGTGTCTGGAT
GTCCCAGCTTCTCCGATCACCACCGCGTTCTGGGAGAGGAACCTTCCATCTGTCCCTGGG
TTTCTGAGGCTGCTTGGATTCTCC---GCGTTTCTCACCTCGACAGCGGCAGTAGGGCTC
TTT------GCCTACAAGAGGGGACTGCTGATTAAGAAC
>ENSLACT00000009516_latimeriachalumnae
ATGTCTGTT------------------GAGAAAAGAGATGTGATCATTGTTGGAGGTGGT
CTATCAGGTCTGTCAGCTGCAAAATTGCTAGCAGAGGCGGGGCTGAACGTCTTGGTTCTG
GAGGCCAGGAACCGTGTTGGTGGAAGAACGTACACAGTTCAAGGCCCAGAGTTCCAGTAC
GTAGACCTTGGGGGAGCATATGTTGGACCCACCCAGAATCGCATACTAAGAGTCGCAAAG
GAGTTTGGGGTTAAGACTTACCTGGTAAATGAAAAGGAGCAACTGATTCATTATGTCAAG
GGAAAGTCATACCCCTTCCAAGGGCCTTTCCCTCCTGCATGGAACCCAATTGTCTATCTG
GATTACAACAATCTCTGGAGGACTTTAGATGAGATGGGACGAGAGATTCCTGCAGAAGCT
CCTTGGAAGGCACCCTGTGCTGAAGCGTGGGACAACATGACAATGAAGCAGCTGATTGAT
AAACTCTGCTGGACGAGGGTAGCCAAGGACTTTGCAACGCTATTTGTCAACGTGAATGTA
ACCTCAGAACCCCATGAAGTCTCTGCTCTCTGGTTTCTCTGGTATGTAAAACAATGTGGA
GGAACAAAGAGGATATTTTCAACCACCAATGGCGGGCAGGAGCGGAAGTTTGTTGGCGGC
TCTGGGCAGATTAGCGAGCGCATGGCGGACAGATTGAAAGGCCACGTGAAGTTGAACAAG
CCAGTGGTGAGAATTCTGCAGAATGACAAATCTGTATGTGTAGAGACCCTGGATGGAGAA
AAGTATGAAAGTGCTTATGTCATTAGTGCTGTACCCCCAGCTCTCATTCTGAACATGCAT
TTCAGTCCACCATTACCACCTGTGCGGAACCAGCTGATCCAGAGGGTGCCAATGGGGTCT
ATTATCAAGTGCATGGTGTATTACAAACGTGCCTTCTGGAGGGAGAATGGCTACTGTGGA
ACAATGATGATTGAGGATGAGGCCTCCCCCATCTCTTTGACACTCGATGACACCAAACCA
GATGGGTCCTATCCTGCTATCATGGGGTTTATTCTGGCCAGAAAAGCAAGACAGCTGATA
AACCTCACTAAAGAGGAGAGAAGGAAAGAGAAAATCTGTCAGATCTATGCCAAAGTACTT
GGCACTGATGAAGCTCTCCAGGCTGTTCATTATGAGGAGAAGGACTGGTGTGAGGAGCAG
TACTCCGGGGGCTGCTACACCGCTTACTACTCCCCAGGAACGTTCTACCAGTTCAGCAGG
TCAGTTCTA---------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CGT
>ENSLACT00000014694_latimeriachalumnae
ATGGGCAGC------------------AGCGAGTTCGATGCGATTGTGATTGGAGGTGGC
ATCTCAGGTCTGTCGGCCGCCAAGCTGCTGACTGAGTCTGGGCTGAATGTGGTTGTGTTG
GAGGCCCGTGACAGGGTTGGAGGAAGAACCTTCACCACCAGGAATAAGCATGTTAAGTAT
GTGGACCTTGGCGGAGCCTATGTGGGGCCGACGCAGAATCGCATTCTACGCCTGTCGAAG
GAGCTGGGCATTGAGACGTATAAAGTGAATGAAGTGGAGCGCTTCATCCATCACATAAAG
GGAAAATCATATCCTTTCCAGGGACCATTCCCTCCAATGTGGAATCCACTTGCCTTCCTG
GATTATAATAACCTCTGGAGAACACTGGATGAAATGGGAAAAGAGATCCCCAGGGAAGCC
CCGTGGAAGGCCCCACATGCCGAAGAATGGGACAAAATGACCATGAAGGATCTGATTGAC
AAAATCTGCTGGACAGAAGCTGCCAAGCAGTTTGCCACGCTGTTTGTGAATGTCAACGTT
ACTTCTGAGCCCTGTGAGGTCTCTGCTCTCTGGTTCCTGTGGTACGTGAAGCAGTGCGGT
GGAACGACCAGGATCTTTTCAATTGGTAATGGTGGGCAGGAGCGCAAGTTTGTCGGAGGT
TCAGGTCAGATCAGTGAGAAGATGATGGAGATCCTTGGAGATCGGGTGAAACTACAGGGA
CCTGTAATCAGCATTGATCAGTCCGGAGACGGTGTGGTCGTGGAAACTCTGAACCATGAG
AAGTATGAGGCCAAATATGTCATTAGTGCCATTCCCCCATCCCTTAGCATGAAGATTCAT
TACAAGCCACCTTTGCCACCAATACGAAACCAGTTTATCTATCGAGTTCCGATTGGATCT
GTTATCAAGTGTATGGTCTATTACAAGGAAGCCTTTTGGAAAAAGAAGGATTTCTGTGGC
TGTATGATGATTGAAGATGAAGAAGCTCCTATCGGTGTGACTCTGGATGACACCAAGCCC
GATGGCACTGTTCCTGCTATTATGGGTTTCATCCTTGCCCGAAAAGCTAGGAGGCTGGCA
CATATCACAAAAGAAGAAAGG---AAAACGAAAATCTGTGAACTTTATGCAAGGGTTCTT
GGATCAGAGGAAGCTTTACATCCAGTACACTATGAAGAGAAGAACTGGTGCGAGGAGGAG
TACTCGGGCGGGTGTTACGCTGCTTACTTCCCACCAGGAATAATGACCCAGTTTGGCAAG
GTAATCCGTCAGCCAGTTGGCAGAATTTTCTTTGCTGGCACTGAGACGGCTACCGAGTGG
AGCGGCTACATGGAGGGGGCAGTGCAGGCTGGAGAGAGAGCAGCCAGAGAGGTACGGTGC
---AGAAATGTGATC---------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ATAACATACCTACTG
>ENSLACT00000014695_latimeriachalumnae
---------------------------------AATTTTCTACTTCTCCAAAGAAACTTT
CTTTTAGGTCTGTCGGCCGCCAAGCTGCTGACTGAGTCTGGGCTGAATGTGGTTGTGTTG
GAGGCCCGTGACAGGGTTGGAGGAAGAACCTTCACCACCAGGAATAAGCATGTTAAGTAT
GTGGACCTTGGCGGAGCCTATGTGGGGCCGACGCAGAATCGCATTCTACGCCTGTCGAAG
GAGCTGGGCATTGAGACGTATAAAGTGAATGAAGTGGAGCGCTTCATCCATCACATAAAG
GGAAAATCATATCCTTTCCAGGGACCATTCCCTCCAATGTGGAATCCACTTGCCTTCCTG
GATTATAATAACCTCTGGAGAACACTGGATGAAATGGGAAAAGAGATCCCCAGGGAAGCC
CCGTGGAAGGCCCCACATGCCGAAGAATGGGACAAAATGACCATGAAGGATCTGATTGAC
AAAATCTGCTGGACAGAAGCTGCCAAGCAGTTTGCCACGCTGTTTGTGAATGTCAACGTT
ACTTCTGAGCCCTGTGAGGTCTCTGCTCTCTGGTTCCTGTGGTACGTGAAGCAGTGCGGT
GGAACGACCAGGATCTTTTCAATTGGTAATGGTGGGCAGGAGCGCAAGTTTGTCGGAGGT
TCAGGTCAGATCAGTGAGAAGATGATGGAGATCCTTGGAGATCGGGTGAAACTACAGGGA
CCTGTAATCAGCATTGATCAGTCCGGAGACGGTGTGGTCGTGGAAACTCTGAACCATGAG
AAGTATGAGGCCAAATATGTCATTAGTGCCATTCCCCCATCCCTTAGCATGAAGATTCAT
TACAAGCCACCTTTGCCACCAATACGAAACCAGTTTATCTATCGAGTTCCGATTGGATCT
GTTATCAAGTGTATGGTCTATTACAAGGAAGCCTTTTGGAAAAAGAAGGATTTCTGTGGC
TGTATGATGATTGAAGATGAAGAAGCTCCTATCGGTGTGACTCTGGATGACACCAAGCCC
GATGGCACTGTTCCTGCTATTATGGGTTTCATCCTTGCCCGAAAAGCTAGGAGGCTGGCA
CATATCACAAAAGAAGAAAGG---AAAACGAAAATCTGTGAACTTTATGCAAGGGTTCTT
GGATCAGAGGAAGCTTTACATCCAGTACACTATGAAGAGAAGAACTGGTGCGAGGAGGAG
TACTCGGGCGGGTGTTACGCTGCTTACTTCCCACCAGGAATAATGACCCAGTTTGGCAAG
GTAATCCGTCAGCCAGTTGGCAGAATTTTCTTTGCTGGCACTGAGACGGCTACCGAGTGG
AGCGGCTACATGGAGGGGGCAGTGCAGGCTGGAGAGAGAGCAGCCAGAGAGAGTAGACGC
CATGCAGCATCATCAAAGACCAGGGAGAAGCCGGGGGGAACAAAGCCTGACAAACACGAT
GTCCCAGCTTCTCCGATCACCACCGCGTTCTGGGAGAGGAACCTTCCATCTGTCCCTGGG
TTTCTGAGGCTGCTTGGATTCTCC---GCGTTTCTCACCTCGACAGCGGCAGTAGGGCTC
TTT------GCCTACAAGAGGGGACTGCTGATTAAGAAC
>ENSLACT00000026689_latimeriachalumnae
ATGACCAGC------------------AATAAATATGATGTAATTGTCATTGGAGCAGGC
ATCTCAGGTCTGTCGGCTGCCAAGCTGCTGACTGAGTCTGGGCTGAATGTGGTTGTGTTG
GAGGCCCGTGACAGGGTTGGAGGAAGAACCTTCACCACCAGGAATAAGCATGTTAAGTAT
GTGGACCTTGGCGGAGCCTATGTGGGGCCAACGCAGAATCGCATTCTACGCCTGTCGAAG
GAGCTGGGCATTGAGACGTATAAAGTGAATGAAGTGGAACGCCTCATCCATCATGTCAAG
GGTAAGTCGTATCCCTTTAGGGGTCCTTTCCCTCCTATGTGGAACCCCATTGCCTATATG
GATTACAACAACCTGTGGAGAACAATGGACGAAATGGGGAAGGAGATCCCCAAGGAAGCC
CCGTGGAAGGCCCCACATGCTGAAGAATGGGATAAAATTACCATGAAGGATCTGATTGAC
AAAATCTGCTGGACAGGTGTTGCCAAGCAGTTTGCCACGCTGTTTGTGAATGTCAACGTT
ACTTCTGAACCCCATGAGGTCTCTGCTCTCTGGTTCCTGTGGTATGTGAAGCAGTGCGGT
GGAACGACCAGGATCTTTTCAACAACCAATGGTGGACAGGAGCGTAAGTTTGTTGGCGGT
TCAAGCCAGATCAGTGAGAAGATGATGGATCTCCTTGGAGATCAGGTGAAACTGCAGAGA
CCTGTAGTCGGCATTGATCAGTCTGGGGAGGATGTGGTCGTGGAGACTCTAAACCGTGAG
AAGTATGAGGCCAAATATGTCATTAGTGCCATTCCTCCAACCCTTAGTGTGAAGATTCAC
TACAACCCACCTTTGCCGCCTTTGAGAAACCAGTTAATCCATCGTGTTCCTTTGGGATCC
GTTATCAAGTGCATGGTGTATTACAAGGACTCATTTTGGAGAAAGCAGGATTACTGTGGC
AGCATGATAATTGAAGAAGAGGATGCTCCAATTGGGCTGACACTGGATGACACCAAACCA
GATGGCAGTGTGCCTGCCATTATGGGATTCATTCTTGCCCGAAAAGCCAGAAGACTAGCA
CATTTCACCAAAGAAGAGCGA---AAGAAGAAAATCTGTGAACTTTATGCAAGAGTTCTT
GGATCACAGGAAGCTTTACAGCCTGTACACTATGAAGAGAAGAACTGGTGTGAGGAGGAG
TACTCGGGCGGGTGTTACACTGCTTACTTCCCACCAGGAATAATGACCCAGTTTGGCAAG
GTAATCCGTCAGCCAGTTGGCAGAATTTTCTTTGCCGGCACTGAGACGGCTACCGAGTGG
AGCGGCTACATGGAGGGGGCAGTGCAGGCTGGAGAGAGAGCAGCCAGAGAGATCTTATGT
---TCAATGAGAAGAATTCCTGAAAGTGAAATCTGGAAGCCTGAGCCAGAGTGTCTGGAT
GTCCCAGCTTCTCCGATCACCACCGCGTTCTGGGAGAGGAACCTTCCATCTGTCCCTGGG
TTTCTGAGGCTGCTTGGATTCTCC---GCGTTTCTCACCTCGACAGCGGCAGTAGGGCTC
TTT------GCCTACAAGAGGGGACTGCTGATTAAGAAC