Mercurial > repos > ebi-gxa > ct_build_cell_ontology_dict
diff ct_build_cell_ontology_dict.xml @ 1:7086be9e707e draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 11:20:33 -0400 |
| parents | 406d293e567e |
| children | f1f720a9b679 |
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--- a/ct_build_cell_ontology_dict.xml Wed Apr 08 11:35:35 2020 -0400 +++ b/ct_build_cell_ontology_dict.xml Fri Apr 24 11:20:33 2020 -0400 @@ -10,7 +10,20 @@ cp '$sdrf' input_dir/; #end for - build_cell_ontology_dict.R --input-dir input_dir --condensed-sdrf "${condensed_sdrf}" --barcode-col-name "${barcode_col_name}" --cell-label-col-name "${cell_label_col_name}" --cell-ontology-col-name "${cell_ontology_col_name}" --output-dict-path "${output_dict_path}" --output-text-path "${output_txt_path}" ]]></command> + build_cell_ontology_dict.R --input-dir input_dir --output-dict-path "${output_dict_path}" --output-text-path "${output_txt_path}" + #if $condensed_sdrf + --condensed-sdrf "${condensed_sdrf}" + #end if + #if $barcode_col_name + --barcode-col-name "${barcode_col_name}" + #end if + #if $cell_label_col_name + --cell-label-col-name "${cell_label_col_name}" + #end if + #if $cell_ontology_col_name + --cell-ontology-col-name "${cell_ontology_col_name}" + #end if + ]]></command> <inputs> <param type="data" name="input_sdrfs" label="Input SDRF tables" multiple="true" format="tsv" help="Input SDRF tables" /> <param type="boolean" name="condensed_sdrf" checked="false" label="Condensed SDRF" help="Are the supplied SDRFs of condensed format?" />