Mercurial > repos > ebi-gxa > ct_check_labels
diff ct_macros.xml @ 0:733ef9ca2455 draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author | ebi-gxa |
---|---|
date | Fri, 27 Nov 2020 13:37:20 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ct_macros.xml Fri Nov 27 13:37:20 2020 +0000 @@ -0,0 +1,65 @@ +<macros> + <token name="@TOOL_VERSION@">1.1.1</token> + <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token> + <token name="@PROFILE@">18.01</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.1.9">cell-types-analysis</requirement> + <yield/> + </requirements> + </xml> + <xml name="version"> + <version_command><![CDATA[ + conda list | grep cell-types-analysis | egrep -o [0-9]\.[0-9]\.[0-9] + ]]></version_command> + </xml> + <token name="@VERSION_HISTORY@"><![CDATA[ +**Version history** +0.1.6+galaxy0: Add removing non-alphanumeric characters from labels in metadata files +0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/. +0.0.5+galaxy1: Standardise input/output format into .txt. + ]]></token> + <xml name="sem_siml_options"> + <param type="select" name="sem_siml_metric" label="Semantic similarity metric" help="What semantic similarity metric should be used? NB: if include-sem-siml is set to True, make sure to use a metric that is in the [0;1] interval. See https://www.bioconductor.org/packages/release/bioc/html/Onassis.html for more detail."> + <option value="lin" selected="true">lin</option> + <option value="jaccard">jaccard</option> + <option value="jc_norm">jc_norm</option> + <option value="schlicker">schlicker</option> + <option value="edge_resnik">edge_resnik</option> + <option value="sim">sim</option> + <option value="edge_leachod">edge_leachod</option> + <option value="edge_slimani">edge_slimani</option> + <option value="edge_wupalmer">edge_wupalmer</option> + <option value="edge_rada_lca">edge_rada_lca</option> + <option value="edge_li">edge_li</option> + <option value="resnik">resnik</option> + </param> + </xml> + <xml name="sanitize_strings"> + <sanitizer invalid_char=""> + <valid initial="string.ascii_letters,string.digits"> + <add value="_" /> + <add value="-" /> + <add value="[" /> + <add value="]" /> + <add value=" " /> + </valid> + </sanitizer> + </xml> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @misc{github-cell-types-analysis.git, + author = {Andrey Solovyev, EBI Gene Expression Team}, + year = {2020}, + title = {Suite of scripts for analysis of scRNA-seq cell type classification tool outputs}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/ebi-gene-expression-group/cell-types-analysis.git}, + } + </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> + <yield /> + </citations> + </xml> +</macros>