comparison ct_combine_tool_outputs.xml @ 6:844689a7f66e draft default tip

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"

5:f2e01e023137

<tool id="ct_combine_tool_outputs" name="Cell types - combine tools outputs" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>Combine predictions for single tool from multiple datasets</description>
    <macros>
        <import>ct_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

    <outputs>
        <data name="output_table" format="txt" />
    </outputs>
    <tests>
        <test>
            <param name="input_tables" value="prod_outputs_scpred/E-MTAB-6386_scpred_final-labs.tsv,prod_outputs_scpred/OTHER-DATASET_scpred_final-labs.tsv" />
            <param name="scores" value="TRUE" />
            <param name="exclusions" value="exclusions.yml" />
            <output name="output_table" file="combined_results.tsv" compare="sim_size" />
        </test>
    </tests>

6:844689a7f66e

<tool id="ct_combine_tool_outputs" name="Cell types - combine tools outputs" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
    <description>for single tool from multiple datasets</description>
    <macros>
        <import>ct_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

    <outputs>
        <data name="output_table" format="txt" />
    </outputs>
    <tests>
        <test>
            <param name="input_tables" value="prod_outputs_scpred/E-ENAD-27_scpred.txt,prod_outputs_scpred/E-GEOD-81608_scpred.txt" />
            <param name="scores" value="TRUE" />
            <param name="exclusions" value="exclusions.yml" />
            <output name="output_table" file="combined_results.tsv" compare="sim_size" />
        </test>
    </tests>