Mercurial > repos > ebi-gxa > ct_get_consensus_outputs
comparison ct_get_consensus_outputs.xml @ 2:94927cc336ba draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
| author | ebi-gxa |
|---|---|
| date | Mon, 27 Apr 2020 09:26:09 -0400 |
| parents | a31bc9849f91 |
| children | 559fbff1f573 |
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| 1:a31bc9849f91 | 2:94927cc336ba |
|---|---|
| 25 #if $semantic_sim_metric | 25 #if $semantic_sim_metric |
| 26 --semantic-sim-metric "${semantic_sim_metric}" | 26 --semantic-sim-metric "${semantic_sim_metric}" |
| 27 #end if | 27 #end if |
| 28 ]]></command> | 28 ]]></command> |
| 29 <inputs> | 29 <inputs> |
| 30 <param type="data" name="input_tables" label="Aggregated tables" format="tsv" multiple="true" help="Aggregated prediction tables from multiple tools" /> | 30 <param type="data" name="input_tables" label="Aggregated tables" format="txt" multiple="true" help="Aggregated prediction tables from multiple tools" /> |
| 31 <param type="data" name="tool_table" format="tsv" label="Tools table" help="Table with tools performance metrics" /> | 31 <param type="data" name="tool_table" format="txt" label="Tools table" help="Table with tools performance metrics" /> |
| 32 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" /> | 32 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" /> |
| 33 <param type="data" name="exclusions" label="Exclusions file" format="yml" optional="true" help="Yaml file with trivial terms and unlabelled cells" /> | 33 <param type="data" name="exclusions" label="Exclusions file" format="yml" optional="true" help="Yaml file with trivial terms and unlabelled cells" /> |
| 34 <param type="data" name="lab_cl_mapping" format="rdata" label="cl terms mapping" help="Label - CL term mapping" /> | 34 <param type="data" name="lab_cl_mapping" format="rdata" label="cl terms mapping" help="Label - CL term mapping" /> |
| 35 <param type="data" name="ontology_graph" format="obo" label="Ontology graph" help="Ontology graph to run similairty calculations" /> | 35 <param type="data" name="ontology_graph" format="obo" label="Ontology graph" help="Ontology graph to run similairty calculations" /> |
| 36 <param type="text" name="semantic_sim_metric" label="Semantic similarity metric" value="edge_resnik" help="Type of semantic similarity metric used" /> | 36 <param type="text" name="semantic_sim_metric" label="Semantic similarity metric" value="edge_resnik" help="Type of semantic similarity metric used" /> |