Mercurial > repos > ebi-gxa > ct_get_empirical_dist
comparison ct_get_empirical_dist.xml @ 2:25bb7e49e10d draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
| author | ebi-gxa |
|---|---|
| date | Mon, 27 Apr 2020 09:27:25 -0400 |
| parents | 9d5e6a4ec5b5 |
| children | ce70358b0fe3 |
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| 1:9d5e6a4ec5b5 | 2:25bb7e49e10d |
|---|---|
| 19 #if $exclusions | 19 #if $exclusions |
| 20 --semantic-sim-metric "${sem_sim_metric}" | 20 --semantic-sim-metric "${sem_sim_metric}" |
| 21 #end if | 21 #end if |
| 22 ]]></command> | 22 ]]></command> |
| 23 <inputs> | 23 <inputs> |
| 24 <param type="data" name="input_ref_file" label="Input reference file" format="tsv" help="Text file with reference cell labels" /> | 24 <param type="data" name="input_ref_file" label="Input reference file" format="txt" help="Text file with reference cell labels" /> |
| 25 <param type="data" name="exclusions" format="yml" label="Exclusions file" help="YML file with excluded/unlabelled terms" /> | 25 <param type="data" name="exclusions" format="yml" label="Exclusions file" help="YML file with excluded/unlabelled terms" /> |
| 26 <param type="text" name="label_col_ref" label="Reference label column" value="cell_type" help="Label column in reference file" /> | 26 <param type="text" name="label_col_ref" label="Reference label column" value="cell_type" help="Label column in reference file" /> |
| 27 <param type="data" name="lab_cl_mapping" label="Label - CL term mapping" format="rdata" help="Mapping between cell labels and ontology terms" /> | 27 <param type="data" name="lab_cl_mapping" label="Label - CL term mapping" format="rdata" help="Mapping between cell labels and ontology terms" /> |
| 28 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" /> | 28 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" /> |
| 29 <param type="integer" name="num_iter" value='5' label="Number of iterations" help="Number of simulations to generate empirical CDF" /> | 29 <param type="integer" name="num_iter" value='5' label="Number of iterations" help="Number of simulations to generate empirical CDF" /> |