view ct_get_tool_pvals.xml @ 4:4290ef6cbb68 draft

"planemo upload for repository commit 8c1bd2ab8a3f988e205677a3bb1ffda1e5694fe1"
author ebi-gxa
date Wed, 17 Jun 2020 12:32:20 -0400
parents 39f348e76f41
children 52df56743cd9
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<tool id="ct_get_tool_pvals" name="Cell types - get tool p-values" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>Get p-values for tool performance metrics</description>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
        get_tool_pvals.R --input-table "${input_table}" --emp-dist-list "${emp_dist_list}" --output-table "${output_table}" ]]></command>
        <param type="data" name="input_table" label="Table with tool stats" format="txt" help="Path to the table of tool statistics from get_tool_performance_table.R" />
        <param type="data" name="emp_dist_list" label="List of empirical distributions" format="rdata" help="Path to the list of empirical distributions in .rds format" />
        <data name="output_table" format="txt" />
            <param name="input_table" value="tool_perf_table.tsv" />
            <param name="emp_dist_list" value="empirical_dist_list.rds" />
            <output name="output_table" file="tool_perf_pvals.tsv" compare="sim_size" />
    <expand macro="citations" />