comparison decoupler_pathway_inference.xml @ 9:81ccee273bc6 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 05690508f6fc11cfc14213efedfd2bca5bb6040e

8:9864fd2cc1f0

<tool id="decoupler_pathway_inference" name="Decoupler Pathway Inference" version="1.4.0+galaxy1" profile="20.05" license="MIT">
    <description>
        of functional genesets/pathways for scRNA-seq data.
    </description>
    <requirements>
        <requirement type="package" version="1.4.0">decoupler</requirement>

            -i '$input_anndata'
            -n '$input_network_file'
            --min_n "$min_n"
            --method '$method'
            $use_raw
            --source $source
            --target $target
            --weight $weight
            #if $gene_symbols_field:
                --var_gene_symbols_field '$gene_symbols_field'
            #end if
            --output "inference"
            $write_activities_path

9:81ccee273bc6

<tool id="decoupler_pathway_inference" name="Decoupler Pathway Inference" version="1.4.0+galaxy2" profile="20.05" license="MIT">
    <description>
        of functional genesets/pathways for scRNA-seq data.
    </description>
    <requirements>
        <requirement type="package" version="1.4.0">decoupler</requirement>

            -i '$input_anndata'
            -n '$input_network_file'
            --min_n "$min_n"
            --method '$method'
            $use_raw
            --source '$source'
            --target '$target'
            --weight '$weight'
            #if $gene_symbols_field:
                --var_gene_symbols_field '$gene_symbols_field'
            #end if
            --output "inference"
            $write_activities_path