diff get_test_data.sh @ 0:59a7f3f83aec draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 20f4a739092bd05106d5de170523ad61d66e41fc

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_test_data.sh	Sun Sep 24 08:44:24 2023 +0000
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+BASENAME_FILE='mito_counted_anndata.h5ad'
+
+MTX_LINK='https://zenodo.org/record/7053673/files/Mito-counted_AnnData'
+
+# convenience for getting data
+function get_data {
+  local link=$1
+  local fname=$2
+
+  if [ ! -f $fname ]; then
+    echo "$fname not available locally, downloading.."
+    wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link
+  fi
+}
+
+# get matrix data
+mkdir -p test-data
+pushd test-data
+get_data $MTX_LINK $BASENAME_FILE