Mercurial > repos > ebi-gxa > decoupler_pseudobulk

diff get_test_data.sh @ 5:893ff9213a34 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
author: ebi-gxa
date: Fri, 15 Mar 2024 12:18:11 +0000
parents: 59a7f3f83aec
--- a/get_test_data.sh	Thu Nov 16 20:05:16 2023 +0000
+++ b/get_test_data.sh	Fri Mar 15 12:18:11 2024 +0000
@@ -19,3 +19,19 @@
 mkdir -p test-data
 pushd test-data
 get_data $MTX_LINK $BASENAME_FILE
+
+
+# Download input anndata for decoupler-pathway_inference
+BASENAME_FILE='pbmc3k_processed.h5ad'
+
+MTX_LINK='https://zenodo.org/records/3752813/files/pbmc3k_processed.h5ad'
+
+get_data $MTX_LINK $BASENAME_FILE
+
+# Download output anndata for decoupler-pathway_inference
+BASENAME_FILE='test.h5ad'
+
+MTX_LINK='https://zenodo.org/records/10401958/files/test.h5ad'
+
+get_data $MTX_LINK $BASENAME_FILE
+
author	ebi-gxa
date	Fri, 15 Mar 2024 12:18:11 +0000
parents	59a7f3f83aec
children