Mercurial > repos > ebi-gxa > droplet_barcode_plot
comparison dropletBarcodePlot.xml @ 3:8f605643ccfd draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml commit 39412ddc5dbeb136161a9d9fb0f9f78520159ccc"
| author | ebi-gxa |
|---|---|
| date | Tue, 24 Mar 2020 12:03:14 -0400 |
| parents | 7782648d8b56 |
| children |
comparison
equal
deleted
inserted
replaced
| 2:7782648d8b56 | 3:8f605643ccfd |
|---|---|
| 2 <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description> | 2 <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.0.1">scxa-plots</requirement> | 4 <requirement type="package" version="0.0.1">scxa-plots</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}" | 7 dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}" |
| 8 #if $input.type == 'mtx_matrix' | 8 #if $input.type == 'mtx_matrix' |
| 9 --mtx-matrix ${input.mtx_matrix} | 9 --mtx-matrix ${input.mtx_matrix} |
| 10 #if $input.cellsbyrow | 10 #if $input.cellsbyrow |
| 11 --cells-by-row | 11 --cells-by-row |
| 12 #end if | 12 #end if |