diff dropletutils-empty-drops.xml @ 4:fa662ca7ae7f draft default tip

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"

--- a/dropletutils-empty-drops.xml	Mon Jun 29 13:05:26 2020 -0400
+++ b/dropletutils-empty-drops.xml	Fri Nov 27 13:39:42 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="dropletutils_empty_drops" name="DropletUtils emptyDrops" version="@TOOL_VERSION@+galaxy1">
+<tool id="dropletutils_empty_drops" name="DropletUtils emptyDrops" version="@TOOL_VERSION@+galaxy0">
   <description>Distinguish between droplets containing cells and ambient RNA in a droplet-based single-cell RNA sequencing experiment.</description>
   <macros>
     <import>dropletutils_macros.xml</import>
@@ -30,6 +30,19 @@
     <data name="output_rdata" format="rdata" label="${tool.name} on ${on_string}: serialized SingleCellExperiment object"/>
     <data name="output_txt" format="txt" label="${tool.name} on ${on_string}: tabular output"/>
   </outputs>
+  <tests>
+    <test>
+      <param name="input" value="raw_sce.rds" />
+      <param name="lower" value="1000" />
+      <param name="niters" value="10000" />
+      <param name="testambient" value="False" />
+      <param name="ignore" value="500" />
+      <param name="retain" value="200" />
+      <param name="filter_empty" value="True" />
+      <output name="output_rdata" file="empty_filt_sce.rds" compare="sim_size" delta="1000000" />
+      <output name="output_txt" file="empty_filt.txt" compare="sim_size" delta="1000000" />
+    </test>
+  </tests>
 
   <help><![CDATA[
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