Mercurial > repos > ebi-gxa > dropletutils_empty_drops
changeset 4:fa662ca7ae7f draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
| author | ebi-gxa |
|---|---|
| date | Fri, 27 Nov 2020 13:39:42 +0000 |
| parents | 8dd732e13393 |
| children | |
| files | dropletutils-empty-drops.xml dropletutils_macros.xml |
| diffstat | 2 files changed, 16 insertions(+), 3 deletions(-) [+] |
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--- a/dropletutils-empty-drops.xml Mon Jun 29 13:05:26 2020 -0400 +++ b/dropletutils-empty-drops.xml Fri Nov 27 13:39:42 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="dropletutils_empty_drops" name="DropletUtils emptyDrops" version="@TOOL_VERSION@+galaxy1"> +<tool id="dropletutils_empty_drops" name="DropletUtils emptyDrops" version="@TOOL_VERSION@+galaxy0"> <description>Distinguish between droplets containing cells and ambient RNA in a droplet-based single-cell RNA sequencing experiment.</description> <macros> <import>dropletutils_macros.xml</import> @@ -30,6 +30,19 @@ <data name="output_rdata" format="rdata" label="${tool.name} on ${on_string}: serialized SingleCellExperiment object"/> <data name="output_txt" format="txt" label="${tool.name} on ${on_string}: tabular output"/> </outputs> + <tests> + <test> + <param name="input" value="raw_sce.rds" /> + <param name="lower" value="1000" /> + <param name="niters" value="10000" /> + <param name="testambient" value="False" /> + <param name="ignore" value="500" /> + <param name="retain" value="200" /> + <param name="filter_empty" value="True" /> + <output name="output_rdata" file="empty_filt_sce.rds" compare="sim_size" delta="1000000" /> + <output name="output_txt" file="empty_filt.txt" compare="sim_size" delta="1000000" /> + </test> + </tests> <help><![CDATA[ ========================================================================================================================================
--- a/dropletutils_macros.xml Mon Jun 29 13:05:26 2020 -0400 +++ b/dropletutils_macros.xml Fri Nov 27 13:39:42 2020 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.0.3</token> + <token name="@TOOL_VERSION@">1.0.4</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.4">dropletutils-scripts</requirement> + <requirement type="package" version="0.0.5">dropletutils-scripts</requirement> </requirements> </xml>