Mercurial > repos > ebi-gxa > fastq_trim_poly_at

comparison get_test_data.sh @ 1:ebca4912eabe draft default tip

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/qc/fastq_utils commit 94b7fe8e2147adc32748e2921729b99669e13a1b"
author ebi-gxa
date Tue, 15 Feb 2022 16:38:32 +0000
parents dcc82e999439
children
comparison
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0:dcc82e999439 1:ebca4912eabe
8 BAR22_FILE="barcode_test2_2.fastq.gz" 8 BAR22_FILE="barcode_test2_2.fastq.gz"
9 INTER_FILE="inter.fastq.gz" 9 INTER_FILE="inter.fastq.gz"
10 A1_FILE="a_1.fastq.gz" 10 A1_FILE="a_1.fastq.gz"
11 POLYAT_FILE="poly_at.fastq.gz" 11 POLYAT_FILE="poly_at.fastq.gz"
12 POLYAT3_FILE="poly_at_len3.fastq.gz" 12 POLYAT3_FILE="poly_at_len3.fastq.gz"
13 TEST212_FILE="test_21_2.fastq.gz"
13 14
14 BAR11_LINK=$BASE_LINK"/"$BAR11_FILE 15 BAR11_LINK=$BASE_LINK"/"$BAR11_FILE
15 BAR12_LINK=$BASE_LINK"/"$BAR12_FILE 16 BAR12_LINK=$BASE_LINK"/"$BAR12_FILE
16 BAR21_LINK=$BASE_LINK"/"$BAR21_FILE 17 BAR21_LINK=$BASE_LINK"/"$BAR21_FILE
17 BAR22_LINK=$BASE_LINK"/"$BAR22_FILE 18 BAR22_LINK=$BASE_LINK"/"$BAR22_FILE
18 INTER_LINK=$BASE_LINK"/"$INTER_FILE 19 INTER_LINK=$BASE_LINK"/"$INTER_FILE
19 A1_LINK=$BASE_LINK"/"$A1_FILE 20 A1_LINK=$BASE_LINK"/"$A1_FILE
20 POLYAT_LINK=$BASE_LINK"/"$POLYAT_FILE 21 POLYAT_LINK=$BASE_LINK"/"$POLYAT_FILE
21 POLYAT3_LINK=$BASE_LINK"/"$POLYAT3_FILE 22 POLYAT3_LINK=$BASE_LINK"/"$POLYAT3_FILE
23 TEST212_LINK=$BASE_LINK"/"$TEST212_FILE
22 24
23 function get_data { 25 function get_data {
24 local link=$1 26 local link=$1
25 local fname=$2 27 local fname=$2
26 28
38 get_data $BAR21_LINK $BAR21_FILE 40 get_data $BAR21_LINK $BAR21_FILE
39 get_data $BAR22_LINK $BAR22_FILE 41 get_data $BAR22_LINK $BAR22_FILE
40 get_data $INTER_LINK $INTER_FILE 42 get_data $INTER_LINK $INTER_FILE
41 get_data $A1_LINK $A1_FILE 43 get_data $A1_LINK $A1_FILE
42 get_data $POLYAT_LINK $POLYAT_FILE 44 get_data $POLYAT_LINK $POLYAT_FILE
45 get_data $TEST212_LINK $TEST212_FILE
43 get_data $POLYAT3_LINK $POLYAT3_FILE 46 get_data $POLYAT3_LINK $POLYAT3_FILE
47 get_data $TEST212_LINK $TEST212_FILE
48 get_data $POLYAT3_LINK $POLYAT3_FILE