Mercurial > repos > ebi-gxa > fastq_trim_poly_at
comparison get_test_data.sh @ 1:ebca4912eabe draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/qc/fastq_utils commit 94b7fe8e2147adc32748e2921729b99669e13a1b"
author | ebi-gxa |
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date | Tue, 15 Feb 2022 16:38:32 +0000 |
parents | dcc82e999439 |
children |
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0:dcc82e999439 | 1:ebca4912eabe |
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8 BAR22_FILE="barcode_test2_2.fastq.gz" | 8 BAR22_FILE="barcode_test2_2.fastq.gz" |
9 INTER_FILE="inter.fastq.gz" | 9 INTER_FILE="inter.fastq.gz" |
10 A1_FILE="a_1.fastq.gz" | 10 A1_FILE="a_1.fastq.gz" |
11 POLYAT_FILE="poly_at.fastq.gz" | 11 POLYAT_FILE="poly_at.fastq.gz" |
12 POLYAT3_FILE="poly_at_len3.fastq.gz" | 12 POLYAT3_FILE="poly_at_len3.fastq.gz" |
13 TEST212_FILE="test_21_2.fastq.gz" | |
13 | 14 |
14 BAR11_LINK=$BASE_LINK"/"$BAR11_FILE | 15 BAR11_LINK=$BASE_LINK"/"$BAR11_FILE |
15 BAR12_LINK=$BASE_LINK"/"$BAR12_FILE | 16 BAR12_LINK=$BASE_LINK"/"$BAR12_FILE |
16 BAR21_LINK=$BASE_LINK"/"$BAR21_FILE | 17 BAR21_LINK=$BASE_LINK"/"$BAR21_FILE |
17 BAR22_LINK=$BASE_LINK"/"$BAR22_FILE | 18 BAR22_LINK=$BASE_LINK"/"$BAR22_FILE |
18 INTER_LINK=$BASE_LINK"/"$INTER_FILE | 19 INTER_LINK=$BASE_LINK"/"$INTER_FILE |
19 A1_LINK=$BASE_LINK"/"$A1_FILE | 20 A1_LINK=$BASE_LINK"/"$A1_FILE |
20 POLYAT_LINK=$BASE_LINK"/"$POLYAT_FILE | 21 POLYAT_LINK=$BASE_LINK"/"$POLYAT_FILE |
21 POLYAT3_LINK=$BASE_LINK"/"$POLYAT3_FILE | 22 POLYAT3_LINK=$BASE_LINK"/"$POLYAT3_FILE |
23 TEST212_LINK=$BASE_LINK"/"$TEST212_FILE | |
22 | 24 |
23 function get_data { | 25 function get_data { |
24 local link=$1 | 26 local link=$1 |
25 local fname=$2 | 27 local fname=$2 |
26 | 28 |
38 get_data $BAR21_LINK $BAR21_FILE | 40 get_data $BAR21_LINK $BAR21_FILE |
39 get_data $BAR22_LINK $BAR22_FILE | 41 get_data $BAR22_LINK $BAR22_FILE |
40 get_data $INTER_LINK $INTER_FILE | 42 get_data $INTER_LINK $INTER_FILE |
41 get_data $A1_LINK $A1_FILE | 43 get_data $A1_LINK $A1_FILE |
42 get_data $POLYAT_LINK $POLYAT_FILE | 44 get_data $POLYAT_LINK $POLYAT_FILE |
45 get_data $TEST212_LINK $TEST212_FILE | |
43 get_data $POLYAT3_LINK $POLYAT3_FILE | 46 get_data $POLYAT3_LINK $POLYAT3_FILE |
47 get_data $TEST212_LINK $TEST212_FILE | |
48 get_data $POLYAT3_LINK $POLYAT3_FILE |