Mercurial > repos > ebi-gxa > garnett_get_std_output
view garnett_get_std_output.xml @ 0:40b587883bd9 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 4c3dfa7bbd82d702e7e8187c7556f3289804cb49"
author | ebi-gxa |
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date | Wed, 08 Apr 2020 06:25:07 -0400 |
parents | |
children | 1023eae1b147 |
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<tool id="garnett_get_std_output" name="Garnett - get standard output" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>Get final output in standard format to allow for downstream analysis of predicted labels by tools of the EBI gene expression group's cell-types-analysis package</description> <macros> <import>garnett_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ garnett_get_std_output.R --input-object '${input_object}' --output-file-path '${output_file_path}' ]]></command> <inputs> <param type="data" name="input_object" label="input CDS object" format="rdata" help="CDS object with predicted labels" /> </inputs> <outputs> <data name="output_file_path" format="txt" /> </outputs> <tests> <test> <param name="input_object" value="cds_pred_labs.rds" /> <output name="output_file_path" value="garnett_output_tbl.txt" compare="sim_size" /> </test> </tests> <help><![CDATA[ @HELP@ @VERSION_HISTORY@ ]]></help> <expand macro="citations" /> </tool>