Mercurial > repos > ebi-gxa > garnett_get_std_output
changeset 1:1023eae1b147 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
author | ebi-gxa |
---|---|
date | Fri, 24 Apr 2020 11:22:22 -0400 (2020-04-24) |
parents | 40b587883bd9 |
children | 07deabaded2b |
files | garnett_get_std_output.xml garnett_macros.xml |
diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/garnett_get_std_output.xml Wed Apr 08 06:25:07 2020 -0400 +++ b/garnett_get_std_output.xml Fri Apr 24 11:22:22 2020 -0400 @@ -5,10 +5,11 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - garnett_get_std_output.R --input-object '${input_object}' --output-file-path '${output_file_path}' + garnett_get_std_output.R --input-object '${input_object}' --classifier '${classifier}' --output-file-path '${output_file_path}' ]]></command> <inputs> <param type="data" name="input_object" label="input CDS object" format="rdata" help="CDS object with predicted labels" /> + <param type="data" name="classifier" label="classifier object" format="rdata" help="Classifier object in rdata format" /> </inputs> <outputs> <data name="output_file_path" format="txt" />
--- a/garnett_macros.xml Wed Apr 08 06:25:07 2020 -0400 +++ b/garnett_macros.xml Fri Apr 24 11:22:22 2020 -0400 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.3">garnett-cli</requirement> + <requirement type="package" version="0.0.5">garnett-cli</requirement> <yield/> </requirements> </xml> @@ -21,7 +21,7 @@ <citations> <citation type="bibtex"> @article{, - url = {https://doi.org/10.1038/s41592-019-0535-3}, + url = {https://doi.org/10.1038/s41592-019-0535-3}, author = {Hannah A. Pliner and Jay Shendure and Cole Trapnell}, title = {Supervised classification enables rapid annotation of cell atlases}, journal = {Nature Methods} @@ -38,7 +38,7 @@ } </citation> <yield /> + <citation type="doi">10.1101/2020.04.08.032698</citation> </citations> </xml> </macros> -