Mercurial > repos > ebi-gxa > gtf2gene_list

annotate test-data/annotation.txt @ 6:1a642de6db01 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/gtf-2-gene-list/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
author ebi-gxa
date Wed, 04 Mar 2020 06:44:32 -0500
parents 247b439a78f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
1 gene_id chromosome start end width source type score phase gene_version gene_name gene_source gene_biotype mito
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
2 ENSG00000223972 1 11869 14409 2541 havana gene NA NA 5 DDX11L1 havana transcribed_unprocessed_pseudogene False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
3 ENSG00000227232 1 14404 29570 15167 havana gene NA NA 5 WASH7P havana unprocessed_pseudogene False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
4 ENSG00000278267 1 17369 17436 68 mirbase gene NA NA 1 MIR6859-1 mirbase miRNA False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
5 ENSG00000243485 1 29554 31109 1556 havana gene NA NA 5 MIR1302-2HG havana lncRNA False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
6 ENSG00000284332 1 30366 30503 138 mirbase gene NA NA 1 MIR1302-2 mirbase miRNA False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
7 ENSG00000237613 1 34554 36081 1528 havana gene NA NA 2 FAM138A havana lncRNA False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
8 ENSG00000268020 1 52473 53312 840 havana gene NA NA 3 OR4G4P havana unprocessed_pseudogene False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
9 ENSG00000240361 1 57598 64116 6519 havana gene NA NA 2 OR4G11P havana transcribed_unprocessed_pseudogene False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
10 ENSG00000186092 1 65419 71585 6167 ensembl_havana gene NA NA 6 OR4F5 ensembl_havana protein_coding False
247b439a78f7 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
ebi-gxa
parents:
diff changeset
11 ENSG00000238009 1 89295 133723 44429 ensembl_havana gene NA NA 6 AL627309.1 ensembl_havana lncRNA False