Mercurial > repos > ebi-gxa > gtf2gene_list

diff test-data/annotation.txt @ 1:247b439a78f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/util/.shed.yml commit 194d2e0af16624c9a3d1af92f7b3686d2e0ee552
author ebi-gxa
date Fri, 18 Oct 2019 10:10:54 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotation.txt	Fri Oct 18 10:10:54 2019 -0400
@@ -0,0 +1,11 @@
+gene_id	chromosome	start	end	width	source	type	score	phase	gene_version	gene_name	gene_source	gene_biotype	mito
+ENSG00000223972	1	11869	14409	2541	havana	gene	NA	NA	5	DDX11L1	havana	transcribed_unprocessed_pseudogene	False
+ENSG00000227232	1	14404	29570	15167	havana	gene	NA	NA	5	WASH7P	havana	unprocessed_pseudogene	False
+ENSG00000278267	1	17369	17436	68	mirbase	gene	NA	NA	1	MIR6859-1	mirbase	miRNA	False
+ENSG00000243485	1	29554	31109	1556	havana	gene	NA	NA	5	MIR1302-2HG	havana	lncRNA	False
+ENSG00000284332	1	30366	30503	138	mirbase	gene	NA	NA	1	MIR1302-2	mirbase	miRNA	False
+ENSG00000237613	1	34554	36081	1528	havana	gene	NA	NA	2	FAM138A	havana	lncRNA	False
+ENSG00000268020	1	52473	53312	840	havana	gene	NA	NA	3	OR4G4P	havana	unprocessed_pseudogene	False
+ENSG00000240361	1	57598	64116	6519	havana	gene	NA	NA	2	OR4G11P	havana	transcribed_unprocessed_pseudogene	False
+ENSG00000186092	1	65419	71585	6167	ensembl_havana	gene	NA	NA	6	OR4F5	ensembl_havana	protein_coding	False
+ENSG00000238009	1	89295	133723	44429	ensembl_havana	gene	NA	NA	6	AL627309.1	ensembl_havana	lncRNA	False