Mercurial > repos > ebi-gxa > gtf2gene_list

view test-data/annotation.txt @ 7:14b3f2a4523b draft default tip

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/gtf-2-gene-list/.shed.yml commit 5a62f18c80ddd55cfcc9d64546fde4e20be3e070"
author ebi-gxa
date Mon, 19 Jul 2021 08:00:24 +0000
parents 247b439a78f7
children
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gene_id	chromosome	start	end	width	source	type	score	phase	gene_version	gene_name	gene_source	gene_biotype	mito
ENSG00000223972	1	11869	14409	2541	havana	gene	NA	NA	5	DDX11L1	havana	transcribed_unprocessed_pseudogene	False
ENSG00000227232	1	14404	29570	15167	havana	gene	NA	NA	5	WASH7P	havana	unprocessed_pseudogene	False
ENSG00000278267	1	17369	17436	68	mirbase	gene	NA	NA	1	MIR6859-1	mirbase	miRNA	False
ENSG00000243485	1	29554	31109	1556	havana	gene	NA	NA	5	MIR1302-2HG	havana	lncRNA	False
ENSG00000284332	1	30366	30503	138	mirbase	gene	NA	NA	1	MIR1302-2	mirbase	miRNA	False
ENSG00000237613	1	34554	36081	1528	havana	gene	NA	NA	2	FAM138A	havana	lncRNA	False
ENSG00000268020	1	52473	53312	840	havana	gene	NA	NA	3	OR4G4P	havana	unprocessed_pseudogene	False
ENSG00000240361	1	57598	64116	6519	havana	gene	NA	NA	2	OR4G11P	havana	transcribed_unprocessed_pseudogene	False
ENSG00000186092	1	65419	71585	6167	ensembl_havana	gene	NA	NA	6	OR4F5	ensembl_havana	protein_coding	False
ENSG00000238009	1	89295	133723	44429	ensembl_havana	gene	NA	NA	6	AL627309.1	ensembl_havana	lncRNA	False