comparison monocle3-create.xml @ 3:46a523dc303f draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 660486ba0e1ef2f0195e7c6f75448221ba4640f7"

2:2e446b0cb437

<?xml version="1.0" encoding="utf-8"?>
<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
  <description>a Monocle3 object from input data</description>
  <macros>
    <import>monocle3-macros.xml</import>
  </macros>
  <expand macro="requirements"/>

  <inputs>
    <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
    <param name="expression_matrix_format" type="select" label="Format of expression matrix">
      <option value="rds" selected="true">RDS</option>
      <option value="tsv">TSV</option>
      <option value="csv">CSV</option>
    </param>
    <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
    <param name="cell_metadata_format" type="select" label="Format of cell metadata">
      <option value="rds" selected="true">RDS</option>

3:46a523dc303f

<?xml version="1.0" encoding="utf-8"?>
<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
  <description>a Monocle3 object from input data</description>
  <macros>
    <import>monocle3-macros.xml</import>
  </macros>
  <expand macro="requirements"/>

  <inputs>
    <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
    <param name="expression_matrix_format" type="select" label="Format of expression matrix">
      <option value="rds" selected="true">RDS</option>
      <option value="tsv">TSV</option>
      <option value="mtx">MTX</option>
      <option value="csv">CSV</option>
    </param>
    <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
    <param name="cell_metadata_format" type="select" label="Format of cell metadata">
      <option value="rds" selected="true">RDS</option>