Mercurial > repos > ebi-gxa > monocle3_learngraph
view monocle3-macros.xml @ 1:98e99ab36505 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb
author | ebi-gxa |
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date | Wed, 29 Jan 2020 10:38:03 -0500 |
parents | 710d112ee525 |
children | 17e74fba97fd |
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<macros> <token name="@TOOL_VERSION@">0.1.3</token> <token name="@HELP@">More information can be found at https://cole-trapnell-lab.github.io/monocle3/ and https://github.com/ebi-gene-expression-group/monocle-scripts</token> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** 0.1.3+galaxy0: Updated to monocle3-cli 0.0.5 to fix bug with tsv inputs. 0.1.2+galaxy0: Initial version based on monocle3-cli 0.0.3 and monocle3 0.1.2 ]]></token> <token name="@INPUT_OPTS@"> --input-object-format '${input_object_format}' '${input_object_file}' </token> <token name="@OUTPUT_OPTS@"> --output-object-format '${output_object_format}' output.RDS #if $introspective --introspective #end if </token> <token name="@VERBOSE@"> #if $verbose --verbose #end if </token> <xml name="requirements"> <requirements> <requirement type="package" version="0.0.5">monocle3-cli</requirement> <yield/> </requirements> </xml> <xml name="citations"> <citations> <yield /> <citation type="doi">10.1038/nmeth.4402</citation> <citation type="bibtex"> @misc{githubscanpy-scripts, author = {Ni Huang, Krzysztof Polanski, EBI Gene Expression Team}, year = {2019}, title = {Monocle3-cli: command line interface for Monocle3}, publisher = {GitHub}, journal = {GitHub repository}, url = {https://github.com/ebi-gene-expression-group/monocle-scripts}, }</citation> </citations> </xml> <xml name="input_object_params"> <param name="input_object_file" argument="input-object-file" type="data" format="rdata" label="Input object in RDS format"/> <param name="input_object_format" argument="--input-object-format" type="select" label="Format of input object"> <option value="cds3" selected="true">Monocle3 object in RDS</option> </param> </xml> <xml name="output_object_params"> <param name="output_object_format" argument="--output-object-format" type="select" label="Format of output object"> <option value="cds3" selected="true">Monocle3 object in RDS</option> </param> <param name="introspective" argument="--introspective" type="boolean" checked="true" label="Print introspective information of output object"/> </xml> <xml name="verbose_flag"> <param name="verbose" argument="--verbose" type="boolean" checked="false" label="Emit verbose output"/> </xml> </macros>