comparison monocle3-macros.xml @ 1:e17c3123cdb5 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb

0:5520da33a868

<macros>
  <token name="@TOOL_VERSION@">0.1.2</token>
  <token name="@HELP@">More information can be found at https://cole-trapnell-lab.github.io/monocle3/ and https://github.com/ebi-gene-expression-group/monocle-scripts</token>
  <token name="@VERSION_HISTORY@"><![CDATA[
**Version history**

0.1.2+galaxy0: Initial version based on monocle3-cli 0.0.3 and monocle3 0.1.2
    ]]></token>
  <token name="@INPUT_OPTS@">
    --input-object-format '${input_object_format}' '${input_object_file}'

#end if
  </token>

  <xml name="requirements">
    <requirements>
      <requirement type="package" version="0.0.3">monocle3-cli</requirement>
      <yield/>
    </requirements>
  </xml>

  <xml name="citations">

    <param name="output_object_format" argument="--output-object-format" type="select" label="Format of output object">
      <option value="cds3" selected="true">Monocle3 object in RDS</option>
    </param>
    <param name="introspective" argument="--introspective" type="boolean" checked="true" label="Print introspective information of output object"/>
  </xml>
  
  <xml name="verbose_flag">
  	<param name="verbose" argument="--verbose" type="boolean" checked="false" label="Emit verbose output"/>
  </xml>
</macros>

1:e17c3123cdb5

<macros>
  <token name="@TOOL_VERSION@">0.1.3</token>
  <token name="@HELP@">More information can be found at https://cole-trapnell-lab.github.io/monocle3/ and https://github.com/ebi-gene-expression-group/monocle-scripts</token>
  <token name="@VERSION_HISTORY@"><![CDATA[
**Version history**

0.1.3+galaxy0: Updated to monocle3-cli 0.0.5 to fix bug with tsv inputs.

0.1.2+galaxy0: Initial version based on monocle3-cli 0.0.3 and monocle3 0.1.2
    ]]></token>
  <token name="@INPUT_OPTS@">
    --input-object-format '${input_object_format}' '${input_object_file}'

#end if
  </token>

  <xml name="requirements">
    <requirements>
      <requirement type="package" version="0.0.5">monocle3-cli</requirement>
      <yield/>
    </requirements>
  </xml>

  <xml name="citations">

    <param name="output_object_format" argument="--output-object-format" type="select" label="Format of output object">
      <option value="cds3" selected="true">Monocle3 object in RDS</option>
    </param>
    <param name="introspective" argument="--introspective" type="boolean" checked="true" label="Print introspective information of output object"/>
  </xml>

  <xml name="verbose_flag">
  	<param name="verbose" argument="--verbose" type="boolean" checked="false" label="Emit verbose output"/>
  </xml>
</macros>