diff monocle3-preprocess.xml @ 1:0869b0264af1 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb

--- a/monocle3-preprocess.xml	Mon Sep 16 09:50:29 2019 -0400
+++ b/monocle3-preprocess.xml	Wed Jan 29 10:38:23 2020 -0500
@@ -16,7 +16,7 @@
     --use-genes '${use_genes}'
 #end if
 #if $residual_model_formula_str
-    --residual-model-formula-str '~${residual_model_formula_str}'
+    --residual-model-formula-str '${residual_model_formula_str}'
 #end if
 #if $pseudo_count
     --pseudo-count '${pseudo_count}'
@@ -44,7 +44,11 @@
       <option value="size_only">Size factor correction only</option>
     </param>
     <param name="use_genes" argument="--use-genes" type="text" optional="true" label="Manually subset the gene pool to these genes for dimensionality reduction."/>
-    <param name="residual_model_formula_str" argument="--residual-model-formula-str" type="text" optional="true" label="A string model formula specifying effects to subtract from the data (excluding the leading ~)."/>
+    <param name="residual_model_formula_str" argument="--residual-model-formula-str" type="text" optional="true" label="A string model formula specifying effects to subtract from the data.">
+      <sanitizer>
+        <valid initial="string.printable"/>
+      </sanitizer>
+    </param>
     <param name="pseudo_count" argument="--pseudo-count" optional="true" type="float" value="1" label="Amount to increase expression values before dimensionality reduction."/>
     <param name="no_scaling" argument="--no-scaling" type="boolean" checked="false" label="When this option is NOT set, scale each gene before running trajectory reconstruction."/>
     <expand macro="verbose_flag"/>