Mercurial > repos > ebi-gxa > salmon_kallisto_mtx_to_10x
comparison salmonKallistoMtxTo10x.xml @ 9:e42c217a450f draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 12e9d45608ff77753b1bb492b8bd4130af5bd1ce"
| author | ebi-gxa |
|---|---|
| date | Wed, 11 Mar 2020 11:28:41 -0400 |
| parents | 5675dc87bb8d |
| children | 88f5a0a6a818 |
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| 8:5675dc87bb8d | 9:e42c217a450f |
|---|---|
| 1 <tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy4" profile="18.01"> | 1 <tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy5" profile="18.01"> |
| 2 <description>Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data</description> | 2 <description>Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.4.1">scipy</requirement> | 4 <requirement type="package" version="1.4.1">scipy</requirement> |
| 5 <requirement type="package" version="1.0.1">pandas</requirement> | 5 <requirement type="package" version="1.0.1">pandas</requirement> |
| 6 <requirement type="package" version="5.37">file</requirement> | |
| 6 </requirements> | 7 </requirements> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 8 file $mtx_file | grep 'gzip compressed' > /dev/null; | 9 file $mtx_file | grep 'gzip compressed' > /dev/null; |
| 9 if [ $? -eq 0 ]; then | 10 if [ $? -eq 0 ]; then |
| 10 matrixfile=matrix.mtx.gz; | 11 matrixfile=matrix.mtx.gz; |