diff sc3-calc-dists.xml @ 0:d005fe979d80 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 9bf9a6e46a330890be932f60d1d996dd166426c4

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sc3-calc-dists.xml	Wed Apr 03 11:35:30 2019 -0400
@@ -0,0 +1,40 @@
+<?xml version="1.0" encoding="utf-8"?>
+<tool id="sc3_calc_dists" name="SC3 Calculate Distances" version="@TOOL_VERSION@+galaxy0">
+  <description>between cells</description>
+  <macros>
+    <import>sc3-macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command detect_errors="exit_code"><![CDATA[
+sc3-sc3-calc-dists.R -i '${sc3_prepared}' -o '${sc3_distances}'
+  ]]></command>
+
+  <inputs>
+    <param name="sc3_prepared" type="data" format="rdata" label="Serialised sc3 SingleCellExperiment object"/>
+  </inputs>
+
+  <outputs>
+    <data name="sc3_distances" format="rdata" label="${tool.name} on ${on_string}: serialised sc3 SingleCellExperiment with calculated distances"/>
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="sc3_prepared" value="sc3_prepared.rdata"/>
+      <output name="sc3_distances" file="sc3_distances.rdata"/>
+    </test>
+  </tests>
+
+  <help><![CDATA[
+=====================================================
+This function calculates distances between the cells.
+=====================================================
+
+It creates and populates the following items of the sc3 slot of the metadata(object):
+- distances: contains a list of distance matrices corresponding to Euclidean, Pearson and Spearman distances.
+
+@HELP@
+
+@VERSION_HISTORY@
+  ]]></help>
+  <expand macro="citations" />
+</tool>