Mercurial > repos > ebi-gxa > scanpy_compute_graph
changeset 21:5ec3b715809c draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 21707e9160aa5028dcf8fb762506790f8e085153-dirty"
| author | ebi-gxa |
|---|---|
| date | Mon, 10 May 2021 15:28:19 +0000 |
| parents | c42c2b540ced |
| children | a30d21fd5319 |
| files | scanpy-neighbours.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/scanpy-neighbours.xml Wed May 05 12:11:28 2021 +0000 +++ b/scanpy-neighbours.xml Mon May 10 15:28:19 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>to derive kNN graph</description> <macros> <import>scanpy_macros2.xml</import> @@ -58,6 +58,7 @@ <param name="use_rep" type="select" label="Use the indicated representation"> <option value="X_pca" selected="true">X_pca, use PCs</option> <option value="X">X, use normalised expression values</option> + <option value="X_diffmap"> X_diffmap, use diffusion map</option> </param> <param name="n_pcs" argument="--n-pcs" type="integer" value="50" optional="true" label="Number of PCs to use"/> <param name="knn" argument="--knn" type="boolean" truevalue="" falsevalue="--no-knn" checked="true"