Mercurial > repos > ebi-gxa > scanpy_compute_graph

changeset 22:a30d21fd5319 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 3365d5d4f7930e736fa6814df36d68e578d45d46-dirty"
author ebi-gxa
date Thu, 22 Jul 2021 20:57:34 +0000
parents 5ec3b715809c
children bc9e8de21efb
files scanpy-neighbours.xml scanpy_macros2.xml
diffstat 2 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/scanpy-neighbours.xml	Mon May 10 15:28:19 2021 +0000
+++ b/scanpy-neighbours.xml	Thu Jul 22 20:57:34 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>to derive kNN graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
--- a/scanpy_macros2.xml	Mon May 10 15:28:19 2021 +0000
+++ b/scanpy_macros2.xml	Thu Jul 22 20:57:34 2021 +0000
@@ -1,10 +1,12 @@
 <macros>
-  <token name="@TOOL_VERSION@">1.7.2</token>
+  <token name="@TOOL_VERSION@">1.8.1</token>
   <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token>
   <token name="@PROFILE@">18.01</token>
   <token name="@VERSION_HISTORY@"><![CDATA[
 **Version history**
 
+1.8.1+galaxy0: Upate to scanpy-scripts 1.0.1 (running scanpy ==1.8.1), including Scrublet integration.
+
 1.7.2+galaxy0: Upate to scanpy-scripts 0.3.3 (running scanpy ==1.7.2) to incorporate fix for object output from PAGA plotting, to allow PAGA init of FDG.
 
 1.6.0+galaxy0: Update to scanpy-scripts 0.2.13 (running scanpy ==1.6.0) to incorporate new options, code simplifications, and batch integration methods. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home  at
@@ -59,7 +61,7 @@
 
   <xml name="requirements">
     <requirements>
-      <requirement type="package" version="0.4.0">scanpy-scripts</requirement>
+      <requirement type="package" version="1.1.0">scanpy-scripts</requirement>
       <yield/>
     </requirements>
   </xml>