Mercurial > repos > ebi-gxa > scanpy_filter_cells
comparison scanpy-filter-cells.xml @ 14:cf3fb754ddde draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
| author | ebi-gxa |
|---|---|
| date | Mon, 07 Sep 2020 14:03:18 +0000 |
| parents | 3dcc1629e420 |
| children | 7fd39eb52f38 |
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| 13:da8c130348b6 | 14:cf3fb754ddde |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@" > | 2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" > |
| 3 <description>based on counts and numbers of genes expressed</description> | 3 <description>based on counts and numbers of genes expressed</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 77 <param name="input_format" value="anndata"/> | 77 <param name="input_format" value="anndata"/> |
| 78 <param name="output_format" value="anndata"/> | 78 <param name="output_format" value="anndata"/> |
| 79 <repeat name="parameters"> | 79 <repeat name="parameters"> |
| 80 <param name="name" value="n_genes"/> | 80 <param name="name" value="n_genes"/> |
| 81 <param name="min" value="200"/> | 81 <param name="min" value="200"/> |
| 82 <param name="max" value="2500"/> | 82 <param name="max" value="20000"/> |
| 83 </repeat> | 83 </repeat> |
| 84 <repeat name="parameters"> | 84 <repeat name="parameters"> |
| 85 <param name="name" value="n_counts"/> | 85 <param name="name" value="n_counts"/> |
| 86 <param name="min" value="0"/> | 86 <param name="min" value="0"/> |
| 87 <param name="max" value="1e9"/> | 87 <param name="max" value="1e9"/> |
| 88 </repeat> | 88 </repeat> |
| 89 <output name="output_h5" file="output.h5" ftype="h5" compare="sim_size"/> | 89 <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/> |
| 90 </test> | 90 </test> |
| 91 </tests> | 91 </tests> |
| 92 | 92 |
| 93 <help><![CDATA[ | 93 <help><![CDATA[ |
| 94 =================================================================== | 94 =================================================================== |