Mercurial > repos > ebi-gxa > scanpy_filter_cells

diff scanpy-filter-cells.xml @ 20:7fd39eb52f38 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ebe77c8718ec65277f4dc0d71fa5f4c5677df62d-dirty"
author ebi-gxa
date Wed, 05 May 2021 12:08:46 +0000
parents cf3fb754ddde
children e9283529cba1
line wrap: on
line diff
--- a/scanpy-filter-cells.xml	Mon Apr 12 14:40:40 2021 +0000
+++ b/scanpy-filter-cells.xml	Wed May 05 12:08:46 2021 +0000
@@ -30,6 +30,7 @@
     #set subs = ' '.join(["--subset 'c:{name}' '{subset}'".format(**$s) for $s in $subsets])
     ${subs}
 #end if
+    @SAVE_MATRIX_OPTS@
     @INPUT_OPTS@
     @OUTPUT_OPTS@
     @EXPORT_MTX_OPTS@
@@ -63,6 +64,7 @@
       <param name="subset" type="data" format="tabular" label="List of values to keep" help="A one-column headerless text file is required"/>
     </repeat>
     <param name="force_recalc" label="Force recalculation of QC vars" type="boolean" truevalue="--force-recalc" falsevalue="" help="If set, it will recalculate pcts and other existing QC vars, overwriting existing ones."/>
+    <expand macro="save_matrix_params"/>
     <expand macro="export_mtx_params"/>
   </inputs>