Mercurial > repos > ebi-gxa > scanpy_filter_cells

diff scanpy-filter-cells.xml @ 28:bf1e0bdec1db draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:55 +0000
parents 356fa6c27341
children
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--- a/scanpy-filter-cells.xml	Fri Oct 13 14:07:25 2023 +0000
+++ b/scanpy-filter-cells.xml	Tue Feb 27 16:42:55 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@" >
+<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" >
   <description>based on counts and numbers of genes expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -88,7 +88,11 @@
         <param name="min" value="0"/>
         <param name="max" value="1e9"/>
       </repeat>
-      <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="obs/n_genes_by_counts"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>