Mercurial > repos > ebi-gxa > scanpy_filter_genes
comparison scanpy-filter-genes.xml @ 29:cc64914b0cf4 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author | ebi-gxa |
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date | Tue, 27 Feb 2024 16:42:23 +0000 |
parents | 9a36525a8425 |
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28:9a36525a8425 | 29:cc64914b0cf4 |
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1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> | 2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
3 <description>based on counts and numbers of cells expressed</description> | 3 <description>based on counts and numbers of cells expressed</description> |
4 <macros> | 4 <macros> |
5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
80 <repeat name="parameters"> | 80 <repeat name="parameters"> |
81 <param name="name" value="n_counts"/> | 81 <param name="name" value="n_counts"/> |
82 <param name="min" value="0"/> | 82 <param name="min" value="0"/> |
83 <param name="max" value="1e9"/> | 83 <param name="max" value="1e9"/> |
84 </repeat> | 84 </repeat> |
85 <output name="output_h5" file="filter_genes.h5" ftype="h5" compare="sim_size"/> | 85 <output name="output_h5" ftype="h5"> |
86 <assert_contents> | |
87 <has_h5_keys keys="obs/n_genes_by_counts" /> | |
88 </assert_contents> | |
89 </output> | |
86 </test> | 90 </test> |
87 </tests> | 91 </tests> |
88 | 92 |
89 <help><![CDATA[ | 93 <help><![CDATA[ |
90 ===================================================================== | 94 ===================================================================== |