Mercurial > repos > ebi-gxa > scanpy_filter_genes
comparison scanpy-filter-genes.xml @ 21:d82d999fa716 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ebe77c8718ec65277f4dc0d71fa5f4c5677df62d-dirty"
author | ebi-gxa |
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date | Wed, 05 May 2021 12:09:03 +0000 |
parents | fc5b3e76131b |
children | 474a69c47184 |
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20:da2808112bb4 | 21:d82d999fa716 |
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26 #if $subsets | 26 #if $subsets |
27 #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets]) | 27 #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets]) |
28 ${subs} | 28 ${subs} |
29 #end if | 29 #end if |
30 $force_recalc | 30 $force_recalc |
31 @SAVE_MATRIX_OPTS@ | |
31 @INPUT_OPTS@ | 32 @INPUT_OPTS@ |
32 @OUTPUT_OPTS@ | 33 @OUTPUT_OPTS@ |
33 @EXPORT_MTX_OPTS@ | 34 @EXPORT_MTX_OPTS@ |
34 ]]></command> | 35 ]]></command> |
35 | 36 |
55 <repeat name="subsets" title="Subsets to select genes to keep" min="0"> | 56 <repeat name="subsets" title="Subsets to select genes to keep" min="0"> |
56 <param name="name" type="text" value="" label="Name of the categorical variable to filter on"/> | 57 <param name="name" type="text" value="" label="Name of the categorical variable to filter on"/> |
57 <param name="subset" type="data" format="tabular" label="List of values to keep" help="A one-column headerless text file is required"/> | 58 <param name="subset" type="data" format="tabular" label="List of values to keep" help="A one-column headerless text file is required"/> |
58 </repeat> | 59 </repeat> |
59 <param name="force_recalc" label="Force recalculation of QC vars" type="boolean" truevalue="--force-recalc" falsevalue="" help="If set, it will recalculate pcts and other existing QC vars, overwriting existing ones."/> | 60 <param name="force_recalc" label="Force recalculation of QC vars" type="boolean" truevalue="--force-recalc" falsevalue="" help="If set, it will recalculate pcts and other existing QC vars, overwriting existing ones."/> |
61 <expand macro="save_matrix_params"/> | |
60 <expand macro="export_mtx_params"/> | 62 <expand macro="export_mtx_params"/> |
61 </inputs> | 63 </inputs> |
62 | 64 |
63 <outputs> | 65 <outputs> |
64 <expand macro="output_data_obj" description="Filtered cells"/> | 66 <expand macro="output_data_obj" description="Filtered cells"/> |