Mercurial > repos > ebi-gxa > scanpy_filter_genes
comparison scanpy-filter-genes.xml @ 4:fa6c08064fc1 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit d13a0a5fceabe51e1a6fe763767b963623aa295a
| author | ebi-gxa |
|---|---|
| date | Mon, 28 Oct 2019 05:24:17 -0400 |
| parents | 77fbe74247c2 |
| children | f1e4de78d768 |
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| 3:77fbe74247c2 | 4:fa6c08064fc1 |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy2"> | 2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy3"> |
| 3 <description>based on counts and numbers of cells expressed</description> | 3 <description>based on counts and numbers of cells expressed</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 20 #set subs = ' '.join(['--subset g:{name} {subset}'.format(**$s) for $s in $subsets]) | 20 #set subs = ' '.join(['--subset g:{name} {subset}'.format(**$s) for $s in $subsets]) |
| 21 ${subs} | 21 ${subs} |
| 22 #end if | 22 #end if |
| 23 @INPUT_OPTS@ | 23 @INPUT_OPTS@ |
| 24 @OUTPUT_OPTS@ | 24 @OUTPUT_OPTS@ |
| 25 @EXPORT_MTX_OPTS@ | |
| 25 ]]></command> | 26 ]]></command> |
| 26 | 27 |
| 27 <inputs> | 28 <inputs> |
| 28 <expand macro="input_object_params"/> | 29 <expand macro="input_object_params"/> |
| 29 <expand macro="output_object_params"/> | 30 <expand macro="output_object_params"/> |