Mercurial > repos > ebi-gxa > scanpy_filter_genes
diff scanpy-filter-genes.xml @ 29:cc64914b0cf4 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author | ebi-gxa |
---|---|
date | Tue, 27 Feb 2024 16:42:23 +0000 |
parents | 9a36525a8425 |
children |
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--- a/scanpy-filter-genes.xml Fri Oct 13 14:07:30 2023 +0000 +++ b/scanpy-filter-genes.xml Tue Feb 27 16:42:23 2024 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> +<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>based on counts and numbers of cells expressed</description> <macros> <import>scanpy_macros2.xml</import> @@ -82,7 +82,11 @@ <param name="min" value="0"/> <param name="max" value="1e9"/> </repeat> - <output name="output_h5" file="filter_genes.h5" ftype="h5" compare="sim_size"/> + <output name="output_h5" ftype="h5"> + <assert_contents> + <has_h5_keys keys="obs/n_genes_by_counts" /> + </assert_contents> + </output> </test> </tests>