comparison scanpy-find-markers.xml @ 5:74100c9351bc draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

4:23939bfeee92

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy1">
  <description>to find differentially expressed genes between groups</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      </when>
    </conditional>
  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Marker object"/>
    <data name="output_csv" format="csv" from_work_dir="output.csv" label="${tool.name} on ${on_string}: Marker table">
      <filter>output_markers</filter>
    </data>
  </outputs>

5:74100c9351bc

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy6">
  <description>to find differentially expressed genes between groups</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      </when>
    </conditional>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="Marker genes"/>
    <data name="output_csv" format="csv" from_work_dir="output.csv" label="${tool.name} on ${on_string}: Marker table">
      <filter>output_markers</filter>
    </data>
  </outputs>