Mercurial > repos > ebi-gxa > scanpy_find_markers
changeset 16:1670af5eee46 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0fc0cc467014e750dbaa6c47b528b25af0bdc0c4-dirty"
| author | ebi-gxa |
|---|---|
| date | Wed, 07 Oct 2020 16:06:38 +0000 |
| parents | cc776860fae1 |
| children | f04dd4e5b6a7 |
| files | scanpy-find-markers.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/scanpy-find-markers.xml Wed Sep 30 11:16:08 2020 +0000 +++ b/scanpy-find-markers.xml Wed Oct 07 16:06:38 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> +<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> <description>to find differentially expressed genes between groups</description> <macros> <import>scanpy_macros2.xml</import> @@ -14,11 +14,11 @@ --n-genes '${n_genes}' #set groupby = $groupby.replace('INPUT_OBJ', $input_obj_file.__getattr__('name')) --groupby '${groupby}' -#if $settings.key_added - #set key_added = $settings.key_added.replace('GROUPBY', $groupby.__str__) - --key-added '${key_added}' -#end if #if $settings.default == "false" + #if $settings.key_added + #set key_added = $settings.key_added.replace('GROUPBY', $groupby.__str__) + --key-added '${key_added}' + #end if --method '${settings.method}' ${settings.use_raw} ${settings.rankby_abs}