Mercurial > repos > ebi-gxa > scanpy_find_variable_genes
comparison scanpy-find-variable-genes.xml @ 5:cb007db0857d draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
| author | ebi-gxa |
|---|---|
| date | Mon, 25 Nov 2019 14:41:37 -0500 |
| parents | b089f4a55e6b |
| children | de331b5828dc |
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| 4:258e13397a8a | 5:cb007db0857d |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy0"> | 2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy6"> |
| 3 <description>based on normalised dispersion of expression</description> | 3 <description>based on normalised dispersion of expression</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 48 <param name="filter" argument="--subset" type="boolean" truevalue="--subset" falsevalue="" checked="false" | 48 <param name="filter" argument="--subset" type="boolean" truevalue="--subset" falsevalue="" checked="false" |
| 49 label="Remove genes not marked as highly variable"/> | 49 label="Remove genes not marked as highly variable"/> |
| 50 </inputs> | 50 </inputs> |
| 51 | 51 |
| 52 <outputs> | 52 <outputs> |
| 53 <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Variable genes"/> | 53 <expand macro="output_data_obj" description="Variable genes"/> |
| 54 </outputs> | 54 </outputs> |
| 55 | 55 |
| 56 <tests> | 56 <tests> |
| 57 <test> | 57 <test> |
| 58 <param name="input_obj_file" value="normalise_data.h5"/> | 58 <param name="input_obj_file" value="normalise_data.h5"/> |